Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0263
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0381 - 18339290-18339994,18340083-18340103,18341925-183419... 29 3.3
09_06_0081 + 20745627-20748144,20748211-20748308 28 5.7
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 28 5.7
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 28 5.7
10_02_0102 + 5314875-5315231 28 7.5
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 7.5
08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,443... 27 9.9
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 9.9
03_05_0085 - 20638769-20639150,20640054-20640286 27 9.9
>02_03_0381 -
18339290-18339994,18340083-18340103,18341925-18341982,
18342084-18342220,18342480-18342650
Length = 363
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -2
Query: 106 TPSCTEYDSSGSARWRRAAPYCGTSTG--GPAPAAP 5
TPS +DS G + WR + +G GP P AP
Sbjct: 164 TPSRLSHDSPGGSPWRSPMQFQAPMSGYRGPPPGAP 199
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 103 PSCTEYDSSGSARWRRAAPYCGTSTGGPAPAAP 5
P C SS + R+R Y G S+ APAAP
Sbjct: 13 PPCRWTVSSATGRYRFGYGYGGASSSSTAPAAP 45
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 151 AALNRRLKLRFPVRA-TPSCTEYDSSGSARWRRAA--PYCGTSTGGPAPAA 8
AAL + P R+ T SC S G RWR A P G ++G P PA+
Sbjct: 17 AALRKTGSAPSPTRSCTTSCR---SCGRGRWRAPACSPAAGATSGPPRPAS 64
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 133 LKLRFPVRATPSCTEYDSSGSARWRRAAPYCGTSTGGPAPAA 8
L+ P++ATP E S S+RW A P G G +P A
Sbjct: 654 LRHAVPIKATPPPGEPSLSASSRW--AVPRGGAEAAGLSPDA 693
>10_02_0102 + 5314875-5315231
Length = 118
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -2
Query: 118 PVRATPSCTEYDSSGSARWRRAAPYCGTSTGGPAPAA 8
P R+ S T G RWRR+ TST AA
Sbjct: 32 PPRSPHSATTVTRGGRRRWRRSKTATATSTAAEVEAA 68
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 386 HPCNAFIVDTTSLELSRIFHT 448
H C FIV T+S E++++ HT
Sbjct: 259 HKCTRFIVTTSSEEVAQVMHT 279
>08_01_0509 + 4433837-4434437,4434564-4434636,4435408-4437367,
4437721-4437990,4438168-4438605,4438772-4439043,
4439126-4439274,4439339-4439470,4439554-4439880,
4439963-4440357,4440551-4440861,4441304-4441394,
4441806-4441847
Length = 1686
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 9 AAGAGPPVLVPQYGAARRQRAEPEESYSVHDGVALTGKRSLSLR 140
AAGA +P G A +R +P+E + V GV L + SLR
Sbjct: 1268 AAGAALLFNIPAIGFAWWRRRKPQEYFPVVPGVHLGQLKRFSLR 1311
>05_06_0214 - 26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +2
Query: 449 SLVLSPLSNNRWRCTSRAF*VLLDSSLFVRL 541
S+++SP ++R R +S A +LL SS+F +L
Sbjct: 937 SMIISPSGSSRKRSSSTALSLLLKSSMFRQL 967
>03_05_0085 - 20638769-20639150,20640054-20640286
Length = 204
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/45 (42%), Positives = 20/45 (44%)
Frame = -2
Query: 139 RRLKLRFPVRATPSCTEYDSSGSARWRRAAPYCGTSTGGPAPAAP 5
R L RF AT SGS RWRR P T GPA +P
Sbjct: 32 RDLANRFNQSATGFAGGGSWSGSDRWRRKVPV----TAGPASPSP 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,144,742
Number of Sequences: 37544
Number of extensions: 323922
Number of successful extensions: 885
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -