Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0263
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)                      30   1.4  
SB_21987| Best HMM Match : Sulfotransfer_2 (HMM E-Value=4.5e-38)       29   2.5  
SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)                    28   5.8  

>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
          Length = 681

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -2

Query: 154 TAALNRRLKLRFPVRATPSCTEYDSSGSARWRRAAPYCGTSTGGPAPAAPR 2
           TA L   +  RFP+      + YD  G+AR  R   + G    GP P  PR
Sbjct: 398 TALLLMIVHDRFPITCYSLNSCYDEPGTARHVRRMFHPGRGVSGPRPPRPR 448


>SB_21987| Best HMM Match : Sulfotransfer_2 (HMM E-Value=4.5e-38)
          Length = 580

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 201 YVNSMTRENTKHNAHKLQL*IGD 133
           YVN MT+   KHN+ KL + + D
Sbjct: 445 YVNEMTKHRRKHNSEKLSITLSD 467


>SB_3059| Best HMM Match : REJ (HMM E-Value=4.8e-06)
          Length = 2009

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 313 HFFRFASGDPFAVSLRVVPITECVPSL 393
           H    A+  P+A++ RV PI  C P L
Sbjct: 771 HTLSRAASTPYAIACRVYPIRHCAPHL 797


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,444,434
Number of Sequences: 59808
Number of extensions: 372602
Number of successful extensions: 809
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)