Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0263
         (656 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA...    29   7.3  
U29608-1|AAA70336.1| 1099|Drosophila melanogaster LATS protein.        28   9.7  
L39837-1|AAA73959.1| 1099|Drosophila melanogaster tumor suppress...    28   9.7  
BT004830-1|AAO45186.1|  821|Drosophila melanogaster SD19495p pro...    28   9.7  
AE014297-4663|AAF57085.1| 1105|Drosophila melanogaster CG12072-P...    28   9.7  

>AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA
           protein.
          Length = 950

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 118 PVRATPSCTEYDSSGSARWRRAAPYCGTSTGGPAPAAP 5
           P  ++ S   Y S+ S+ +  +AP  G+++GGP PAAP
Sbjct: 627 PSSSSSSGGPYASAPSSSY--SAPSSGSNSGGPYPAAP 662


>U29608-1|AAA70336.1| 1099|Drosophila melanogaster LATS protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 6   GAAGAGPPVLVPQYGAARRQRAEPEES 86
           GA GA PP   P Y A+ + R  P +S
Sbjct: 291 GAGGAAPPPPPPSYTASMQSRQSPTQS 317


>L39837-1|AAA73959.1| 1099|Drosophila melanogaster tumor suppressor
           protein.
          Length = 1099

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 6   GAAGAGPPVLVPQYGAARRQRAEPEES 86
           GA GA PP   P Y A+ + R  P +S
Sbjct: 291 GAGGAAPPPPPPSYTASMQSRQSPTQS 317


>BT004830-1|AAO45186.1|  821|Drosophila melanogaster SD19495p
           protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 6   GAAGAGPPVLVPQYGAARRQRAEPEES 86
           GA GA PP   P Y A+ + R  P +S
Sbjct: 291 GAGGAAPPPPPPSYTASMQSRQSPTQS 317


>AE014297-4663|AAF57085.1| 1105|Drosophila melanogaster CG12072-PA
           protein.
          Length = 1105

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 6   GAAGAGPPVLVPQYGAARRQRAEPEES 86
           GA GA PP   P Y A+ + R  P +S
Sbjct: 291 GAGGAAPPPPPPSYTASMQSRQSPTQS 317


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,174,768
Number of Sequences: 53049
Number of extensions: 535951
Number of successful extensions: 1529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)