Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0263
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine re...    28   5.1  
AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    27   8.9  
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    27   8.9  

>U88178-6|ABA03112.1|  312|Caenorhabditis elegans Hypothetical
           protein W09C3.8 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 124 RFPVRATPSCTEYDSSGSARWRRA 53
           R P R T  CTE+D S +  W+RA
Sbjct: 223 RDPNRWTKICTEWDPSHNKNWKRA 246


>AF022974-7|AAC48042.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein9 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 456 YCLRYLTIDGVVLLGRS----KCY*ILRYLFDYSAIDGITLTGVTISLLLF 596
           +CL     DG++ LG S    +C+  + +   + A  GI +  + I +L+F
Sbjct: 56  FCLFGTLFDGIINLGHSFNRRECFWQISFYIFFQAAQGIIMLVIVIDILIF 106


>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 24  PPVLVPQYGAARRQRAEPEESYSVHDGVALTGKRSLSLRFKAAVY 158
           PP+L     A R Q   P ++ S+H+   L  K++   R KAA+Y
Sbjct: 416 PPILNISLSATRFQPGIPAQNRSIHEW--LYEKKTRKSRRKAAIY 458


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 24  PPVLVPQYGAARRQRAEPEESYSVHDGVALTGKRSLSLRFKAAVY 158
           PP+L     A R Q   P ++ S+H+   L  K++   R KAA+Y
Sbjct: 416 PPILNISLSATRFQPGIPAQNRSIHEW--LYEKKTRKSRRKAAIY 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,372
Number of Sequences: 27780
Number of extensions: 277876
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)