Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0263
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.48 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.64 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.64 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 111 LTGKRSLSLRFKAAVY----AHYVLCFRES*NLHNRILLRAGVRG 233
           +TG RS  +  K  +Y     H V  FR+   LH+   LR G+ G
Sbjct: 1   MTGSRSSEINPKEGLYDEGGKHTVHWFRKGLRLHDNPSLREGLAG 45


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 231 PEPQRVAIFYYVNSMTRENTK 169
           PE  R  +F++++SM   NTK
Sbjct: 613 PEGMRYKMFFFLSSMDESNTK 633


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 231 PEPQRVAIFYYVNSMTRENTK 169
           PE  R  +F++++SM   NTK
Sbjct: 613 PEGMRYKMFFFLSSMDESNTK 633


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 161 ALCFVFSRVIEFT**NIATRWGSG 232
           +  F+F+ +I+F   +  T++GSG
Sbjct: 283 SFAFIFATIIQFAVVHYFTKYGSG 306


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 307  SIHFFRFASGDPFAVSLRVVPITECVPSLQ 396
            S+H F   +G PF  +  V+ +T+   ++Q
Sbjct: 924  SVHSFPTETGLPFVYTFNVIKLTKTSGTVQ 953


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,019
Number of Sequences: 438
Number of extensions: 3684
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)