Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0263
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14160.1 68418.m01656 F-box family protein contains F-box dom...    29   2.7  
At5g14730.1 68418.m01728 expressed protein                             28   4.8  
At3g07700.2 68416.m00926 ABC1 family protein contains Pfam domai...    28   6.3  
At3g07700.1 68416.m00925 ABC1 family protein contains Pfam domai...    28   6.3  
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea...    28   6.3  
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P...    27   8.3  
At3g10440.1 68416.m01252 hypothetical protein                          27   8.3  

>At5g14160.1 68418.m01656 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 395 NAFIVDTTSLELSRIFHTSLVLSPLSNNRWRCTSRAF*VLLDSSLFV 535
           + F+ + +S ++ R+  +S+   P SN RW   +  F ++L  ++FV
Sbjct: 302 DVFVFNLSSQKVQRLSSSSISSRPFSNARWLFPTSYFTMILFPNIFV 348


>At5g14730.1 68418.m01728 expressed protein
          Length = 246

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +1

Query: 271 STLKHFTNTLKFSIHFFRFASGDPFAVSLRVVPITECVPSLQ 396
           ST++  ++T+ FS  F  +ASGD    ++RV+  +E   S++
Sbjct: 2   STMQDLSSTVSFSPSFSFYASGDLVETAVRVIRESESYYSVK 43


>At3g07700.2 68416.m00926 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 695

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 99  RVQNMIPLVRRVGGGRHRIAVRVLEGQRQQRRA 1
           RVQ +   V+ +  G  ++ VRVLE +R  R+A
Sbjct: 600 RVQRIEEFVKELDSGDLKLRVRVLESERAARKA 632


>At3g07700.1 68416.m00925 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 695

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 99  RVQNMIPLVRRVGGGRHRIAVRVLEGQRQQRRA 1
           RVQ +   V+ +  G  ++ VRVLE +R  R+A
Sbjct: 600 RVQRIEEFVKELDSGDLKLRVRVLESERAARKA 632


>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat domain 4 protein (GI:9955698) [Mus
           musculus]
          Length = 427

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 489 QRHLLLDSGDNTRDVWNILDNSRDVVSTIKALQGWHAFSNRNYS 358
           Q +L+  SGD+T  +W+I   S      +  + G HA SN N S
Sbjct: 219 QGYLMSGSGDSTVRLWDITSGSLLDTCEVSTVAG-HAESNENES 261


>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 944

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 349 VSLRVVPITECVPSLQCFYSRYHIPRIIENI 441
           VS+ + P+TE +PSL     R+ IP + EN+
Sbjct: 844 VSVMIKPVTELLPSL---LKRFAIPALTENL 871


>At3g10440.1 68416.m01252 hypothetical protein
          Length = 556

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 51  AARRQRAEPEESYSVHDGVALTGKRSLSLR 140
           +AR +  EPE S S HD +  T +R  ++R
Sbjct: 316 SARLKSQEPEPSESFHDSIETTKRRRSAIR 345


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,026
Number of Sequences: 28952
Number of extensions: 252867
Number of successful extensions: 513
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)