Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0262
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 222 3e-58
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 220 1e-57
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.010
05_02_0037 + 5883285-5884292 31 0.68
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478 31 0.90
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 29 2.8
01_01_0652 + 4975091-4975585 29 2.8
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 29 3.6
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 29 3.6
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 28 8.4
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 28 8.4
06_01_1010 + 7866158-7866661 28 8.4
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 222 bits (542), Expect = 3e-58
Identities = 108/205 (52%), Positives = 133/205 (64%), Gaps = 1/205 (0%)
Frame = +1
Query: 34 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 213
MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 214 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 393
YGKPK G+ QLK RN +S+AEE +SYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 394 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHR 570
V +DS+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHT 180
Query: 571 YSQTKGGSRRAAWLKRNTLQLRRKR 645
+ + + SRRA W + T+ LRR R
Sbjct: 181 HHKAR-PSRRATWKRNQTVSLRRYR 204
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 220 bits (537), Expect = 1e-57
Identities = 107/204 (52%), Positives = 132/204 (64%), Gaps = 1/204 (0%)
Frame = +1
Query: 37 GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXXX 216
GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 217 XXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWV 396
YGKPK G+ QLK RN +S+AEE +SYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 397 AQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHRY 573
+DS+YKYFE+ILVD +H AIR DP+INW+ VHKHRE+RGLTSAG+ RGL GKGH +
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTH 286
Query: 574 SQTKGGSRRAAWLKRNTLQLRRKR 645
+ + SRRA W + T+ LRR R
Sbjct: 287 HKAR-PSRRATWKRNQTVSLRRYR 309
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.010
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +1
Query: 421 FEVILVDPSHKAIRRDPK 474
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 25.0 bits (52), Expect(2) = 0.010
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 274 YGKPKSHGVNQLKPTRN 324
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
>05_02_0037 + 5883285-5884292
Length = 335
Score = 31.5 bits (68), Expect = 0.68
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 117 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQASSC*GC 269
AV ++ AP ++ +A +SP C R CC +P + WWP+ GC
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPRCGCGGGC 323
>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
Length = 772
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -3
Query: 345 FLSNGLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSE 217
+++ G +V G++ V +ALGL ++GT W L T +D++
Sbjct: 587 YVALGSEVPLGVEKVHELALGLELAGTRFLWALRKPTGVSDAD 629
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = -3
Query: 705 SICIQK*ANGKSLTVLDRCLSFAT*LKSVAFEPSCPA*ASLCLRVSMSLAETSGAATSRS 526
++ +Q ++ S++V+D CL S+A CP A++ L ++ + S +AT
Sbjct: 1958 TLFLQGCSSKDSVSVIDECLKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQ 2017
Query: 525 QTTHL 511
+ T +
Sbjct: 2018 ELTEV 2022
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 529 SAGRSSRGLGKGHRYSQTKGGSRRAAW 609
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 469 PKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWL 612
P+++ VH+ RG ++AG R G S G SRR AWL
Sbjct: 264 PRVSGTKRPVHRGLGPRGWSTAGPRDRRSGSASGRSDGAGSSRR-AWL 310
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 517 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLKRNTLQLRR 639
+ L GR + G G + +GG RR AW +R + R
Sbjct: 136 KALVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 418 YFEVILVDPSHKAIRR-DPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRYSQTKGGS 594
Y + LV+ + R+ D + W N ++ G+ + GRSS + + S +KG +
Sbjct: 202 YEQAALVERMQEFKRQIDRESRWSPNGINDSPNGDGIQAIGRSSHKMIEAVMQSASKGKA 261
Query: 595 RRAAW 609
+AW
Sbjct: 262 HISAW 266
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 520 GLTSAGRSSRGLGKGHRYSQTKGGSRRAA 606
G++ +G G G+G KGGSR AA
Sbjct: 174 GVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>06_01_1010 + 7866158-7866661
Length = 167
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 508 REMRGLTSAGRSSRGLGKGHRYSQTKGGSRR 600
R+ G+ G + G GKG R+ GG RR
Sbjct: 57 RKEAGMPGGGARAPGSGKGRRWRPEHGGKRR 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,055,304
Number of Sequences: 37544
Number of extensions: 424189
Number of successful extensions: 1066
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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