Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0262
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             256   2e-68
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   3.7  
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 29   3.7  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 28   8.6  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  256 bits (626), Expect = 2e-68
 Identities = 120/204 (58%), Positives = 143/204 (70%)
 Frame = +1

Query: 34  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 213
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60

Query: 214 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 393
                             ATYGKP + GVN+LK  R+L+S+AEE            +SYW
Sbjct: 61  IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120

Query: 394 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 573
           V QDS YKYFEVI+VDP HKAIRRD +INWI    HKHRE+RGLT+AG  +RG+ KGH Y
Sbjct: 121 VGQDSIYKYFEVIMVDPFHKAIRRDARINWICKPTHKHRELRGLTAAGTKNRGMRKGHNY 180

Query: 574 SQTKGGSRRAAWLKRNTLQLRRKR 645
           ++  G SRRA W + NTL LRR R
Sbjct: 181 NKVIGSSRRANWKRHNTLSLRRYR 204


>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 561 LAETSGAATSRSQTTHLTMLMYSIHDPVDLRIA 463
           + ++SG AT +S    L + + S  DPVD+RIA
Sbjct: 203 IRKSSGNATHQSHNCCLDLRLMSSEDPVDVRIA 235


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = -3

Query: 669  LTVLDRCLSFAT*LKSVAFEPSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLTMLMYSI 490
            LT ++R L F T          CPA   L L+V M L  +S + +    T+     + S+
Sbjct: 1488 LTPMERQLFFKT--AHAHLNSGCPA---LALQVLMELPASSLSESKTGSTSDEAPEVNSL 1542

Query: 489  HDPVDLRIATNGL 451
            HD  D  IAT  L
Sbjct: 1543 HDKTDDMIATGTL 1555


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 91  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 204
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 496 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 585
           +H  + ++GLT A  S   LG GH YS+ K
Sbjct: 61  MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 81  RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCA 233
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,984,237
Number of Sequences: 59808
Number of extensions: 492669
Number of successful extensions: 1118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)