Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0262
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   248   2e-66
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    30   1.4  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    30   1.4  
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    29   2.5  
AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical ...    29   2.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  248 bits (608), Expect = 2e-66
 Identities = 112/204 (54%), Positives = 141/204 (69%)
 Frame = +1

Query: 34  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 213
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ   
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 214 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 393
                              TYGKPK+HGVN+LK  ++ Q++AE             +SYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 394 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 573
           VA+DS+YK++EV+L+DP HKAIRR+P   WI   VHKHRE RGLTSAGR SRGLGKG R+
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRF 180

Query: 574 SQTKGGSRRAAWLKRNTLQLRRKR 645
           S T+GGS+   W ++NT    RKR
Sbjct: 181 SATRGGSQAKNWKRKNTKVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 403 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 519
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 403 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHREMR 519
           D  Y  F  +L D + K  R DP K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRLETR 458


>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y116F11B.3 protein.
          Length = 1042

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/46 (41%), Positives = 27/46 (58%)
 Frame = -3

Query: 333  GLKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDSEYNITLFS 196
            GLKVAR   LVD   +G+ + G ++  T  ATT+   + Y  TL+S
Sbjct: 972  GLKVAR--DLVD-QNIGVWLGGQVNITTTTATTTSNSTSYPSTLYS 1014


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 183 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 34
           S+   RP   GS+  T       V+  PHT   T N    F + LLN+S+  H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578


>AC006723-1|AAF59429.3|  534|Caenorhabditis elegans Hypothetical
           protein Y19D10B.2 protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 554 SARDIDTLKQREAHAGQL---GSNATLFNYVANDKHLSKTVSDF 676
           S+  ID+LK  E   G L   G+N T FN++ N K++++  S F
Sbjct: 480 SSSSIDSLKFMEIIFGSLIINGTNLTNFNFLENLKYVAQLTSKF 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,344,036
Number of Sequences: 27780
Number of extensions: 336476
Number of successful extensions: 788
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)