Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0262
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.9  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   8.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.7  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   8.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 11  YVCHRLLRWVPTDI 52
           +VCH  + W+PT +
Sbjct: 806 FVCHNGMNWMPTHL 819


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 523 LTSAGRSSRGLGKG 564
           +T  G+  +GLGKG
Sbjct: 1   MTGRGKGGKGLGKG 14


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 184 VFGLCPALWAWERGAYESTD 125
           +  +C  LW W R  Y  T+
Sbjct: 51  ILPVCNGLWRWIRLTYGQTN 70


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -2

Query: 184 VFGLCPALWAWERGAYESTD 125
           +  +C  LW W R  Y  T+
Sbjct: 89  ILPVCNGLWRWIRLTYGQTN 108


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 490 NAVHKHREMRGLTSAGRSSRGLGKGHR 570
           N+  K+RE     S  R  RG  + HR
Sbjct: 287 NSYRKYRETSKERSRDRRERGRSREHR 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,029
Number of Sequences: 438
Number of extensions: 3955
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)