Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0261
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.86 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 326 RGMKSAEKLQDIDREAGDVLVRMMEEKDR 412
           RG   AEK   +D +A   +  +  EKDR
Sbjct: 293 RGQSEAEKRLKLDEDADGAVSPLRREKDR 321


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 377 DVLVRMMEEKDRDTCRNLFGHSGPVY 454
           D+ VR  EEKD       FG   PV+
Sbjct: 252 DIQVRFFEEKDGQVLWEGFGDFQPVH 277


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 377 DVLVRMMEEKDRDTCRNLFGHSGPVY 454
           D+ VR  EEKD       FG   PV+
Sbjct: 252 DIQVRFFEEKDGQVLWEGFGDFQPVH 277


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 368 PCLYLVVFLQISFLAV*WESMSIPLCLSY 282
           PC YL+V L +S L V    + +P+ L Y
Sbjct: 75  PCNYLLVSLAVSDLCV--ALLVMPMALLY 101


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 219 ADILQLVVIFVTIPPFWLWDLITQT*RYGH*LPLNCE 329
           A +  ++ I V  PP +   L  QT R G    L CE
Sbjct: 763 AGLSAVIFISVQAPPHFEIKLKNQTARRGEPAVLQCE 799


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,516
Number of Sequences: 438
Number of extensions: 4413
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)