Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0260
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   161   8e-41
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.2  
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   6.9  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   9.1  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  161 bits (392), Expect = 8e-41
 Identities = 83/195 (42%), Positives = 108/195 (55%), Gaps = 2/195 (1%)
 Frame = +3

Query: 144 RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 323
           RD+S E    G HT  V KGL+ G                    H  LSP  E+G + PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128

Query: 324 SRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTIL 497
             I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L++TI L F F   
Sbjct: 129 VGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGG 188

Query: 498 QAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFE 677
           QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +  HH GFE
Sbjct: 189 QAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLTNTHHNGFE 248

Query: 678 AAA*Y*HFVDVV*LF 722
               Y HF DVV LF
Sbjct: 249 CGIYYWHFCDVVWLF 263


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 750 PHQ*IENVKEIIILHLQNVNIKLQLQIQSDDF*KSDYLNVEYSKLIE 610
           P Q  E VK+ + LH +  N++LQL+       KS+  N +  + ++
Sbjct: 184 PEQIKEAVKDNVELHAERANLQLQLKRTESLLQKSEDKNFKLEEKVD 230


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 576 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 701
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +3

Query: 423 IENNFSQTKQRLFLTILLGFYFTILQAYE 509
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,352
Number of Sequences: 5004
Number of extensions: 38637
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)