Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0260
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plu...    29   3.7  
AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.7  
AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.      29   3.7  
Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical p...    28   8.5  

>U70850-3|AAB09122.3|  596|Caenorhabditis elegans Zinc finger plus
           homeodomain, axonguidance protein 1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 321 PSRITPFNPFQIPLLNTIIL 380
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY289599-1|AAP43944.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 321 PSRITPFNPFQIPLLNTIIL 380
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>AY224511-1|AAP37457.1|  596|Caenorhabditis elegans ZAG-1 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 321 PSRITPFNPFQIPLLNTIIL 380
           PS +TPFNP+Q+ +   I+L
Sbjct: 82  PSMVTPFNPYQLMMYRNIML 101


>Z70038-4|CAA93881.1|  427|Caenorhabditis elegans Hypothetical
           protein ZK1067.5 protein.
          Length = 427

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 447 KQRLFLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIAT-GFHGIHVIIGTLFLLIC 623
           +Q L L  LLG+       Y  +E  ++  D  Y     + T GF  +H  +GT+  ++C
Sbjct: 292 RQLLVLVFLLGYMTISACVYTILEPMWSFLDSFYFCLVSLLTVGFGDLHP-VGTVEYMLC 350

Query: 624 YI 629
            I
Sbjct: 351 SI 352


>Z81147-10|CAB03533.3|  671|Caenorhabditis elegans Hypothetical
           protein T09E11.4 protein.
          Length = 671

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 416 LIDRK*LLTNKTKIIFNYFIRILFYYFTSI 505
           LID + LL NKT   F YF    F YFT++
Sbjct: 619 LIDYEPLLFNKTTNRFEYFDSRGFLYFTAV 648


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,197,437
Number of Sequences: 27780
Number of extensions: 204502
Number of successful extensions: 604
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)