Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0260
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...   184   4e-47
At5g19130.2 68418.m02277 GPI transamidase component family prote...    29   4.5  
At5g19130.1 68418.m02276 GPI transamidase component family prote...    29   4.5  
At2g06090.1 68415.m00668 self-incompatibility protein-related si...    29   4.5  

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score =  184 bits (449), Expect = 4e-47
 Identities = 96/193 (49%), Positives = 114/193 (59%)
 Frame = +3

Query: 144 RDISREGTYQGKHTILVNKGLR*GXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 323
           RD+ RE T +G HT +V  G R G                    H  L+P +EIG I PP
Sbjct: 62  RDVLRESTLEGHHTKVVQLGPRYGSILFIVSEVMFFFAFFWASSHSSLAPAVEIGGIWPP 121

Query: 324 SRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLFLTILLGFYFTILQA 503
             I   +P++IP LNT IL  SG  VT AHH+++     +    L  T+LL   FT  Q 
Sbjct: 122 KGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYALVATVLLALVFTGFQG 181

Query: 504 YEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAA 683
            EY +A FTI+D IYGSTFF+ATGFHG HVIIGTLFL+IC IR    H +K HH GFEAA
Sbjct: 182 MEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQYLGHLTKEHHVGFEAA 241

Query: 684 A*Y*HFVDVV*LF 722
           A Y HFVDVV LF
Sbjct: 242 AWYWHFVDVVWLF 254


>At5g19130.2 68418.m02277 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 696

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 495 LQAYEYIEASFTIADRIYGSTFFIATGFHG 584
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 352 IPAADYLEGSATLASSLYSQALGIPTGPHG 381


>At5g19130.1 68418.m02276 GPI transamidase component family protein
           / Gaa1-like family protein contains Pfam profile:
           PF04114 Gaa1-like, GPI transamidase component
          Length = 699

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 495 LQAYEYIEASFTIADRIYGSTFFIATGFHG 584
           + A +Y+E S T+A  +Y     I TG HG
Sbjct: 355 IPAADYLEGSATLASSLYSQALGIPTGPHG 384


>At2g06090.1 68415.m00668 self-incompatibility protein-related
           similar to S1 self-incompatibility protein [Papaver
           rhoeas] GI:452430
          Length = 135

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 474 LGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGI 587
           LG + T+ ++YEY   +F   D ++G T F  T  HG+
Sbjct: 53  LGIH-TVARSYEY---NFKFEDSVFGRTEFFCTLMHGV 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,275,506
Number of Sequences: 28952
Number of extensions: 179604
Number of successful extensions: 301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)