Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0259
         (663 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          27   0.18 
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   1.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.7  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 248 STPYGSVDRSSPPSLPSNKCGSRNKS--TTSLAPPLYTGSASKRTARR 385
           S  Y S++ ++PP  P  +  S  ++  T S  PPLY    +KR   R
Sbjct: 720 SISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKRCEER 767


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 97  DVDIRKDLYANTVLSGGTTMYPGI 168
           D D+ KD     VL GG+T  P I
Sbjct: 150 DADMTKDQIDEIVLVGGSTRIPKI 173


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 287 SLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRC 388
           SL S    + NKS+TS  PP +  S SK     C
Sbjct: 56  SLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSIC 89


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 270 STDPYGVLPLWRSNDLN 220
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 290 LPSNKCGSRNKSTTSLAPPLYTGSA--SKRTA 379
           LP+++C SR  S + + P   +G +  S+R A
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSGESMLSERAA 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,626
Number of Sequences: 336
Number of extensions: 3381
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)