Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0259
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 241 4e-64
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 241 4e-64
SB_56| Best HMM Match : Actin (HMM E-Value=0) 241 4e-64
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 241 5e-64
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 239 1e-63
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 239 1e-63
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 210 6e-55
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 78 7e-15
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 69 3e-12
SB_54| Best HMM Match : Actin (HMM E-Value=0) 57 1e-08
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.006
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 30 1.9
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 28 5.9
SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42) 28 7.8
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 7.8
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 241 bits (590), Expect = 4e-64
Identities = 111/118 (94%), Positives = 115/118 (97%)
Frame = +1
Query: 13 PRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 192
P A+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI
Sbjct: 221 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 280
Query: 193 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 366
+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 281 SALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 241 bits (590), Expect = 4e-64
Identities = 111/118 (94%), Positives = 115/118 (97%)
Frame = +1
Query: 13 PRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 192
P A+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEI
Sbjct: 259 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 318
Query: 193 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 366
T+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 319 TSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 241 bits (590), Expect = 4e-64
Identities = 111/118 (94%), Positives = 115/118 (97%)
Frame = +1
Query: 13 PRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 192
P A+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEI
Sbjct: 258 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 317
Query: 193 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 366
T+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 318 TSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 241 bits (589), Expect = 5e-64
Identities = 111/118 (94%), Positives = 115/118 (97%)
Frame = +1
Query: 13 PRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 192
P A+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TMYPGIADRMQKEI
Sbjct: 259 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEI 318
Query: 193 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 366
+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 319 SALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 239 bits (586), Expect = 1e-63
Identities = 110/118 (93%), Positives = 115/118 (97%)
Frame = +1
Query: 13 PRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 192
P AL QPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTV+SGGTTMYPG+ADRMQKEI
Sbjct: 232 PEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEI 291
Query: 193 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 366
+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 292 SALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 239 bits (585), Expect = 1e-63
Identities = 110/118 (93%), Positives = 115/118 (97%)
Frame = +1
Query: 13 PRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 192
P A+FQPSFLGME+ GIHETTYNSIMKCDVDIRKDLYANTVLSGG+TM+PGIADRMQKEI
Sbjct: 258 PEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEI 317
Query: 193 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 366
+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 318 SALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 210 bits (514), Expect = 6e-55
Identities = 95/118 (80%), Positives = 106/118 (89%)
Frame = +1
Query: 13 PRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 192
P A+FQP+FLGMEA GIHE YN IMKCDVDIRKDLY+N VLSGG+TM+PGIADRMQKEI
Sbjct: 32 PEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGGSTMFPGIADRMQKEI 91
Query: 193 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 366
LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 92 AMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 77.8 bits (183), Expect = 7e-15
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Frame = +1
Query: 13 PRALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKE 189
P F P F + + E N I C +D+R+ LY N VLSGG+TM+ R+Q++
Sbjct: 206 PEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRD 265
Query: 190 IT----------------ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 321
I + P ++ ++I+ ++Y+VW GGS+LAS F + +K
Sbjct: 266 IKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKA 325
Query: 322 EYDESGPSIVHRKCF*THR 378
+YDE GPSI F HR
Sbjct: 326 DYDEHGPSICRHNPF-LHR 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 74.9 bits (176), Expect = 5e-14
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 29/138 (21%)
Frame = +1
Query: 13 PRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEI 192
P ALFQP + +E G+ E +N+I D+D R + Y + VLSGG+TMYPG+ R+++EI
Sbjct: 262 PEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLEREI 321
Query: 193 TAL---------------------APST-----MKIKI-IAPP-ERKYSVWIGGSILAS- 285
L P T K KI I P RK+ V++GG++LA
Sbjct: 322 KQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADI 381
Query: 286 LSTFQQMWISKQEYDESG 339
+ W++++EY+E G
Sbjct: 382 MKDKDSFWMTRKEYEEKG 399
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 69.3 bits (162), Expect = 3e-12
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Frame = +1
Query: 1 EIPLPRALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRM 180
E+ P + G A G+ + S+ D+DIR L+ + +++GG T+ G +R+
Sbjct: 132 EVIPPYMVASKGIEGSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERL 191
Query: 181 QKEITALAPSTMKIKII---APPERKYSVWIGGSILASL 288
+E+ + P +M++K+I + E++++ WIGGSILASL
Sbjct: 192 NRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 56.8 bits (131), Expect = 1e-08
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +1
Query: 22 LFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 144
LFQPS LG + GIHE+ + SI KCD+D+R +L+ N VLSG
Sbjct: 2306 LFQPSLLGRDIDGIHESIFKSIKKCDIDLRAELFHNIVLSG 2346
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Frame = +1
Query: 79 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIA 234
+S++ C +D RK L N VL GGT M PG R+ +EI L S +K+
Sbjct: 64 DSLLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQ 123
Query: 235 PP-ERKYSVWIGGSILASLSTFQQMWISKQEYDE 333
PP + W+GG+I SL +++ Y +
Sbjct: 124 PPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/28 (53%), Positives = 23/28 (82%)
Frame = +1
Query: 82 SIMKCDVDIRKDLYANTVLSGGTTMYPG 165
+I K D+D+R+ LY+N VLSGG+T++ G
Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 10 LPRALFQPSFLGMEACGIHET 72
+P +FQPS LG+E GI ET
Sbjct: 2 VPEIIFQPSMLGLEQAGITET 22
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -2
Query: 275 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD-NTVLAYKSLRMS 102
+DPP+ +Y L+GG ++ + FCI G++V PP+ N+ + R++
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPECNSAIVLPDARIT 814
Query: 101 TS 96
S
Sbjct: 815 AS 816
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 248 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 367
STP +V PP PSN+ + +K S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 290 LPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQP 400
L C SR K P Y G RT ++C +P
Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 127 NTVLSGGTTMYPGIADRMQKEITALAP 207
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
Length = 1066
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 293 PSNKCGSRNKSTTSLAPPLYTGSASK--RTARRCLQQPAAGC 412
P N+ G++ + +L P++TGS + RT + P+A C
Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSARC 920
>SB_40695| Best HMM Match : ABC_tran (HMM E-Value=7.79963e-42)
Length = 355
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -1
Query: 108 DVHVALHDG----VICGLVDAASFHTQERGLEESSGQRNL 1
++ ALHD ++ GLV +H QE G S G+R L
Sbjct: 223 EIWSALHDAKVGPLVSGLVGKLKYHIQEGGANFSVGERQL 262
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 266 VDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSA-SKRTA 379
VD+S P SLP+ K G + S P GS+ SK TA
Sbjct: 1939 VDKSEPGSLPTVKFGVTTTADASSMPKFQFGSSGSKDTA 1977
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,923,886
Number of Sequences: 59808
Number of extensions: 436657
Number of successful extensions: 1317
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1314
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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