Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0257
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 325 1e-89
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 30 1.1
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 2.6
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 3.4
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 3.4
08_02_0478 + 17621678-17623768 28 4.5
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 4.5
08_01_0346 - 3063440-3064189 28 5.9
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 5.9
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 7.8
06_01_0425 - 3045557-3046004,3046852-3046856 27 7.8
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 27 7.8
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 325 bits (799), Expect = 1e-89
Identities = 159/187 (85%), Positives = 169/187 (90%)
Frame = +2
Query: 2 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 181
KKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRI
Sbjct: 9 KKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRI 68
Query: 182 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 361
RELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+
Sbjct: 69 RELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFV 128
Query: 362 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 541
MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGIKV
Sbjct: 129 MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGIKV 188
Query: 542 KIMLPWD 562
KIML WD
Sbjct: 189 KIMLDWD 195
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = -3
Query: 526 YSLSEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 347
+ L++ + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 346 TIASTTYSETSDKLVS 299
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -2
Query: 437 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 333
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 57 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 161
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -3
Query: 121 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 20
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 434 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVL 529
K + GL+IHSG ND+V+++ + + G++
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGII 452
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/75 (20%), Positives = 35/75 (46%)
Frame = +2
Query: 323 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 502
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 503 HVLLRQGVLGIKVKI 547
+L + + +++
Sbjct: 532 EILGEEVARNVTLRV 546
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2
Query: 287 AESLRYKLIGGLAVRRACYGVLR 355
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 27.9 bits (59), Expect = 5.9
Identities = 29/177 (16%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Frame = +2
Query: 26 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 205
GV+ E+ + +++AE+ V + + ++ ++ + +RE+ +++
Sbjct: 325 GVYLGEIARLVFQKMAEES-DIFGTAVDGLSTPFVLSTPNLAAIREDDSPDLREVGKILE 383
Query: 206 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG- 382
+ +P+ V L K+ R I + A R A ++ + + G G
Sbjct: 384 EHLKLPD--VPLKTRKLVARVSDIITRR-----------AARLAAAAIVAILQKIGCDGT 430
Query: 383 -CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 550
C +RG R +++ ++G + +Y+N A +L + + +++M
Sbjct: 431 LCGSTQVRTMRGVRRRTVVAIEGGLFEGYSVFREYLNEALVEILGEEIAATVSLRVM 487
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 467 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 372
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>06_01_0425 - 3045557-3046004,3046852-3046856
Length = 150
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 220 SRAICRIVC*KGGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
++A C+ GG P R+RPG ++ + + + T L+ PF
Sbjct: 37 TKATCKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPF 82
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 253 GGYSWPLRYRPG-RISKIQAYRRSRCTSCLLWC 348
G SW RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,361,714
Number of Sequences: 37544
Number of extensions: 354175
Number of successful extensions: 1014
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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