Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0257
(564 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 348 2e-96
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7) 29 2.6
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 2.6
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 2.6
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 28 4.6
SB_55955| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_55460| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017) 27 8.0
SB_53830| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_51993| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_48637| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_44589| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_37074| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_35876| Best HMM Match : Histone (HMM E-Value=5.1) 27 8.0
SB_30057| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_23531| Best HMM Match : Histone (HMM E-Value=8.9e-09) 27 8.0
SB_21880| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_20370| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_18391| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_17374| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_13453| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_8948| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_4426| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_3841| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_59571| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_58125| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_57761| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_56157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_55483| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_55375| Best HMM Match : Histone (HMM E-Value=9.2e-35) 27 8.0
SB_54709| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_53175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_51431| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_49908| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_48866| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_48698| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_47677| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_45363| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_43396| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2) 27 8.0
SB_38339| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_33151| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_25703| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_20764| Best HMM Match : Protamine_3 (HMM E-Value=9.6) 27 8.0
SB_19243| Best HMM Match : Histone (HMM E-Value=1e-16) 27 8.0
SB_19242| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_18626| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_17756| Best HMM Match : Histone (HMM E-Value=8.5e-41) 27 8.0
SB_17103| Best HMM Match : Histone (HMM E-Value=0.65) 27 8.0
SB_15200| Best HMM Match : Histone (HMM E-Value=0.22) 27 8.0
SB_14746| Best HMM Match : Histone (HMM E-Value=4.4e-32) 27 8.0
SB_13396| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_7960| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_7640| Best HMM Match : Histone (HMM E-Value=4.80001e-41) 27 8.0
SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39) 27 8.0
SB_4579| Best HMM Match : Histone (HMM E-Value=5.29971e-42) 27 8.0
SB_512| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 348 bits (855), Expect = 2e-96
Identities = 168/187 (89%), Positives = 177/187 (94%)
Frame = +2
Query: 2 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 181
KKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGRRI
Sbjct: 7 KKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGRRI 66
Query: 182 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 361
RELTSVVQKRF PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLRFI
Sbjct: 67 RELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFI 126
Query: 362 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 541
MESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P YV+TA RHV LRQGVLGIKV
Sbjct: 127 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGIKV 186
Query: 542 KIMLPWD 562
KIMLPWD
Sbjct: 187 KIMLPWD 193
>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
Length = 383
Score = 29.1 bits (62), Expect = 2.6
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +2
Query: 50 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 211
E+L R++ D YS E +TP +IMA R QSVL ++GR +LT Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230
Query: 212 FNIPEQSVELYA 247
F+ SVE +A
Sbjct: 231 FDDLADSVEQFA 242
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 33 SRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGH-RVCSERKDAESVSSLP*Y 203
+R+ ++ +L + P T +CG + +AR L+ P H R + V SLP Y
Sbjct: 272 TRKMMLTRALSTTPSTTPELRRCGGVLTAREGLIMSPNHPRPYPSDTHCKWVISLPSY 329
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +2
Query: 80 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 259
GY+ + + S +++ A +++ ++ + +RE +QKRF E+ +Y
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000
Query: 260 TRGLCAIAQA 289
RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 2.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +1
Query: 400 WQAAWSTCQINEVCRWTHDPLW 465
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 394 CIWQAAWSTCQINEVCRWTHDPLWRP 471
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 259 YSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 381
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 196 RSTEAIQHSRAICRIVC*KGGYSWPLRYRPGRISKIQAYR 315
RS +Q + + C V GY PLR +P R S + A+R
Sbjct: 464 RSRNPVQRNESYCNAVSRSPGYYSPLRDKPARSSPL-AFR 502
>SB_55955| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_55460| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
Length = 339
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +2
Query: 413 GQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 547
G++ ++ IH G P DY + L R+GV G+ V I
Sbjct: 25 GKKTAGRLRLERTQIHGGSPVIDYKVEVDQVKLAREGVTGVPVVI 69
>SB_53830| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_51993| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_48637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_44589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_37074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_35876| Best HMM Match : Histone (HMM E-Value=5.1)
Length = 157
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_30057| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 260
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 158 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 192
>SB_29024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 998
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 226 LWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRADGSDPH 98
LWN++ + + F + H+ C GG N D A GS+ H
Sbjct: 186 LWNIKDRVLERKYQGVTQGFYTIHS-CFGGVNQDFLASGSEDH 227
>SB_23531| Best HMM Match : Histone (HMM E-Value=8.9e-09)
Length = 110
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_21880| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_20370| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_18391| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_17374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_13453| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_8948| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_4426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_3841| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_59668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 194 SVVQKRFNIPEQSVELYAEKVATRGLCAI 280
+++ + F P E +A K+ TRGLC I
Sbjct: 402 NILHRHFGYPVTFQEFFAIKLITRGLCRI 430
>SB_59571| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_58125| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_57761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_56157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_55483| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_55375| Best HMM Match : Histone (HMM E-Value=9.2e-35)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_54709| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_53175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_51431| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_49908| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_48866| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 205
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 103 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 137
>SB_48698| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_47677| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_45363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_43396| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 131
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 29 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 63
>SB_42599| Best HMM Match : DUF536 (HMM E-Value=7.2)
Length = 120
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +2
Query: 41 ELNEFLTRELAE-DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 217
E+ E + + +AE +G SG EV+ ++ + ++ +TQ E ++ +EL + +KR N
Sbjct: 20 EVIEVVNKLIAEGEGESGNEVKENKVKKKPSVIK-QTQ----EDEKKTKELEELKEKRIN 74
Query: 218 IPE 226
+P+
Sbjct: 75 LPQ 77
>SB_38339| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_33151| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_25703| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_20764| Best HMM Match : Protamine_3 (HMM E-Value=9.6)
Length = 68
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_19243| Best HMM Match : Histone (HMM E-Value=1e-16)
Length = 117
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_19242| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_18626| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_17756| Best HMM Match : Histone (HMM E-Value=8.5e-41)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_17103| Best HMM Match : Histone (HMM E-Value=0.65)
Length = 97
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_15200| Best HMM Match : Histone (HMM E-Value=0.22)
Length = 97
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_14746| Best HMM Match : Histone (HMM E-Value=4.4e-32)
Length = 162
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_13396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_11832| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_7960| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_7640| Best HMM Match : Histone (HMM E-Value=4.80001e-41)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_5701| Best HMM Match : Linker_histone (HMM E-Value=5.9e-39)
Length = 370
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_4579| Best HMM Match : Histone (HMM E-Value=5.29971e-42)
Length = 136
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>SB_512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,697,027
Number of Sequences: 59808
Number of extensions: 403451
Number of successful extensions: 1152
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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