Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0257
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 312 9e-86
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 30 1.0
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 30 1.0
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 30 1.3
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 1.7
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 29 3.1
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.1
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 29 3.1
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 29 3.1
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 29 3.1
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 29 3.1
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 29 3.1
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 29 3.1
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 29 3.1
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 29 3.1
Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 27 7.0
U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein... 27 7.0
Z31590-7|CAA83463.1| 361|Caenorhabditis elegans Hypothetical pr... 27 9.3
U53148-2|AAB37078.1| 360|Caenorhabditis elegans Hypothetical pr... 27 9.3
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 312 bits (767), Expect = 9e-86
Identities = 150/187 (80%), Positives = 167/187 (89%)
Frame = +2
Query: 2 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 181
KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GRRI
Sbjct: 9 KKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRI 68
Query: 182 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 361
+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFI
Sbjct: 69 KELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFI 128
Query: 362 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 541
MESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LRQGV+GIKV
Sbjct: 129 MESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKV 188
Query: 542 KIMLPWD 562
KIMLP+D
Sbjct: 189 KIMLPYD 195
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 487 QHCYQTCASQTRSTRNQGQNHVA 555
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 487 QHCYQTCASQTRSTRNQGQNHVA 555
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 144 GHRVCSERKDAESVSSLP*YRSDSTFQSNL*NCMLKRWL 260
G R C+ KD ++ +S D+ FQ + NC+ K W+
Sbjct: 146 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 184
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 144 GHRVCSERKDAESVSSLP*YRSDSTFQSNL*NCMLKRWL 260
G R C+ KD ++ +S D+ FQ + NC+ K W+
Sbjct: 148 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 186
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 146 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 265
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 68 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 229
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 68 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 229
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical
protein Y49E10.6 protein.
Length = 136
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 2 KKRKFVGDGVFKAELNEFLTRELAEDGY 85
KK F GDG F E E+ +DGY
Sbjct: 895 KKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 2 KKRKFVGDGVFKAELNEFLTRELAEDGY 85
KK F GDG F E E+ +DGY
Sbjct: 895 KKFSFKGDGEFFVSQREVFENEILDDGY 922
>U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein 71
protein.
Length = 136
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 253 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 357
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>Z31590-7|CAA83463.1| 361|Caenorhabditis elegans Hypothetical
protein R01H10.6 protein.
Length = 361
Score = 27.1 bits (57), Expect = 9.3
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 481 IIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 305
++ R + +E+IY L TT+ FTTT H + NTI+S + + + K+
Sbjct: 89 LVTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145
>U53148-2|AAB37078.1| 360|Caenorhabditis elegans Hypothetical
protein C26F1.6 protein.
Length = 360
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 303 TSLSEVSLYVVLAMVFSVSSWNLVPVVVKLLYLASC 410
T++ V LY V M SVS W LV + + YLA C
Sbjct: 77 TAMIMVYLYPVTIMFQSVSVWLLVSITID-RYLAVC 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,412,071
Number of Sequences: 27780
Number of extensions: 285990
Number of successful extensions: 799
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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