Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0257
         (564 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             322   1e-88
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   318   1e-87
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             318   1e-87
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    33   0.13 
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    33   0.13 
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    31   0.53 
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel...    30   0.93 
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai...    29   2.8  
At2g25150.1 68415.m03008 transferase family protein similar to 1...    28   5.0  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   5.0  
At5g54230.1 68418.m06755 myb family transcription factor (MYB49)...    27   6.5  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    27   6.5  
At2g36200.1 68415.m04444 kinesin motor protein-related                 27   6.5  
At5g51270.1 68418.m06356 protein kinase family protein contains ...    27   8.7  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    27   8.7  

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  322 bits (790), Expect = 1e-88
 Identities = 154/187 (82%), Positives = 168/187 (89%)
 Frame = +2

Query: 2   KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 181
           KKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRI
Sbjct: 7   KKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRI 66

Query: 182 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 361
           RELTS+VQKRF  P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+
Sbjct: 67  RELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFV 126

Query: 362 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 541
           MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y++ A RHVLLRQGVLG+KV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGLKV 186

Query: 542 KIMLPWD 562
           KIML WD
Sbjct: 187 KIMLDWD 193


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  318 bits (782), Expect = 1e-87
 Identities = 153/187 (81%), Positives = 167/187 (89%)
 Frame = +2

Query: 2   KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 181
           KKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRI
Sbjct: 7   KKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRI 66

Query: 182 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 361
           RELTS+VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+
Sbjct: 67  RELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFV 126

Query: 362 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 541
           MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y+++A RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQGVLGIKV 186

Query: 542 KIMLPWD 562
           K+ML WD
Sbjct: 187 KVMLDWD 193


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  318 bits (782), Expect = 1e-87
 Identities = 154/187 (82%), Positives = 166/187 (88%)
 Frame = +2

Query: 2   KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 181
           KKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGRRI
Sbjct: 7   KKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRI 66

Query: 182 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 361
           RELTS+VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+
Sbjct: 67  RELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFV 126

Query: 362 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 541
           MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y++ A RHVLLRQGVLGIKV
Sbjct: 127 MESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQGVLGIKV 186

Query: 542 KIMLPWD 562
           KIML WD
Sbjct: 187 KIMLDWD 193


>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 193 SELTDSASFLSEHTLCPGGHNNDLRADGSD 104
           SEL +  + LSEH+L   GH  +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 193 SELTDSASFLSEHTLCPGGHNNDLRADGSD 104
           SEL +  + LSEH+L   GH  +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = -3

Query: 292 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHTL 149
           FG   +   TSS  F   FY L W + +L  YG  L  +AS LS  T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354


>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
           putative (CNGC17) similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc5 GI:4581205 from
           [Arabidopsis thaliana]
          Length = 720

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -3

Query: 292 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHT 152
           FG   +    SS  F   FY L W ++ L  YG  L+ +  F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378


>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 442

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 193 SELTDSASFLSEHTLCPGGHNNDLRADGSD 104
           +EL    + LSEH++   GH  ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431


>At2g25150.1 68415.m03008 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase
           [gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
           III-2-O-benzoyl transferase [gi:11559716] from Taxus
           cuspidata; contains Pfam transferase family domain
           PF00248; contains EST gb:R65039
          Length = 461

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 124 LRADGSDPHFHAGVAVLGQLPSEELIEF 41
           L+   SDP    GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 371 GARGCEVVVSGKLRGQRAKSMKFVDG 448
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


>At5g54230.1 68418.m06755 myb family transcription factor (MYB49)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 319

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 277 SAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHTL-CPGGHNNDLRADGSD 104
           SA   S H+   + ++  WN  S +  G+  + S    S  T    GG  +D  + GSD
Sbjct: 243 SAAFVSDHINDGENFKAGWNFSSSMLAGTSSSSSTPLNSSSTFYVNGGSEDDRESFGSD 301


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +2

Query: 2   KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 178
           K RK  G  + KA + E+  ++    GYSG      P+  + ++     +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406


>At2g36200.1 68415.m04444 kinesin motor protein-related 
          Length = 1056

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -3

Query: 553 QHDFDLDS*YSLSEKHMSGSSVDVI--IARVSRVDHESIYKL 434
           QHD ++DS  + +EK ++ +S D+I  I R+S  +  S+ K+
Sbjct: 865 QHDAEVDSARTAAEKDVTKNSDDIIQQIERMSEDEKASVSKI 906


>At5g51270.1 68418.m06356 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 819

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 105 SLPSARRSLLWPPGHRVCSERKDAESVSS 191
           S P   RS+ W P  R   ERKDA S  S
Sbjct: 295 SSPETSRSVSWNPQFRDFDERKDAMSSMS 323


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 21/78 (26%), Positives = 29/78 (37%)
 Frame = -3

Query: 292 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRAD 113
           F    SA A++S LF         +   L    S  T +    S  +  PG  ++   A 
Sbjct: 193 FSAPSSASASNSSLFGASSSAAT-STSPLFGAPSSATGATPSFSVASSAPGSSSSIFGAT 251

Query: 112 GSDPHFHAGVAVLGQLPS 59
           GS P F    +  G  PS
Sbjct: 252 GSSPSFSVASSASGSSPS 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,927,876
Number of Sequences: 28952
Number of extensions: 274374
Number of successful extensions: 756
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)