Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0256
(749 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 4.6
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 22 4.6
AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein pr... 22 4.6
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 22 6.0
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 22 6.0
DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 22 6.0
AY769608-1|AAV40984.1| 195|Tribolium castaneum heat shock prote... 22 6.0
AY884063-1|AAX84204.1| 682|Tribolium castaneum pro-phenol oxida... 21 8.0
AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B prot... 21 8.0
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 507 LTKYFNFETINEKQKFIFTVHILNYH 430
L YFN + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 507 LTKYFNFETINEKQKFIFTVHILNYH 430
L YFN + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.2 bits (45), Expect = 4.6
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 507 LTKYFNFETINEKQKFIFTVHILNYH 430
L YFN + TV +LNYH
Sbjct: 274 LGTYFNCIMFMVASSVVLTVVVLNYH 299
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 22.2 bits (45), Expect = 4.6
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 240 TFWSASTSFSYWCLFIIRR--LSRIFCSGGSWRPTS 139
T+WS++T+ +W RR +R + + RPT+
Sbjct: 1041 TWWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTT 1076
>AJ606487-1|CAE55183.1| 203|Tribolium castaneum Giant protein
protein.
Length = 203
Score = 22.2 bits (45), Expect = 4.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 133 KKRGRPPAATRTKDSAKSSDDEQA 204
K+R AA R++D+ ++ +DE A
Sbjct: 141 KRRKNNEAAKRSRDARRAKEDEIA 164
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.8 bits (44), Expect = 6.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 498 YFNFETINEKQKFIFTVHILNYH 430
YFN + TV +LNYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.8 bits (44), Expect = 6.0
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -3
Query: 498 YFNFETINEKQKFIFTVHILNYH 430
YFN + TV +LNYH
Sbjct: 277 YFNCIMFMVASSVVLTVVVLNYH 299
>DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein.
Length = 822
Score = 21.8 bits (44), Expect = 6.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 70 VEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 201
V++ G+ +P+ + ES E K P + + KDS+ S+DE+
Sbjct: 70 VQQAGK-KPENVKKEDESDEEK----PTTSFKLKDSSSDSEDER 108
>AY769608-1|AAV40984.1| 195|Tribolium castaneum heat shock protein
70 protein.
Length = 195
Score = 21.8 bits (44), Expect = 6.0
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +2
Query: 164 EQKILLSLLMMNKHQ*LNEVEADQKVPRKKRESRARVK 277
+QK++ + M K + ++ AD+K +K R + K
Sbjct: 61 DQKVMDYFIKMVKQKHKKDIRADKKALQKLRREVEKAK 98
>AY884063-1|AAX84204.1| 682|Tribolium castaneum pro-phenol oxidase
subunit 1 protein.
Length = 682
Score = 21.4 bits (43), Expect = 8.0
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -1
Query: 242 EPFGLPLPRLATGACSSSEDLAESFVLVAAGGRPRFLSSF 123
+ F LPR + + + A GG+P LS+F
Sbjct: 411 QEFKATLPRYTVAQLNYPGVTVTNIEVQAKGGKPNVLSTF 450
>AF227923-1|AAF36721.1| 351|Tribolium castaneum abdominal-B
protein.
Length = 351
Score = 21.4 bits (43), Expect = 8.0
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = -3
Query: 498 YFNFETINEKQKFIFTVHILNYHREQL 418
Y F+T+ +++F+F ++ R +L
Sbjct: 250 YSKFQTLELEKEFLFNAYVSKQKRWEL 276
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,861
Number of Sequences: 336
Number of extensions: 3021
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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