Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0256
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   3.8  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   6.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   8.7  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   8.7  

>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -1

Query: 209 TGACSSSEDLAESFVLVAAGGRPRFLSSFDSGCVPLAFG 93
           TG C    +    F +    G    L  F  GC+  +FG
Sbjct: 628 TGVCIEETEKRPVFTMFGISGMGNHLQIFGGGCICFSFG 666


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 49  SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAK 183
           SD    VV++K   R + N  +  S  ++K+G  PAA  TK +AK
Sbjct: 384 SDGIHLVVDEKSNFREE-NFQRAMSALMEKQGDDPAAMATKGNAK 427


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 91  RPKANGTQPESKELKKRGRPPAATRTKDSAKSSD 192
           +P   G++P  K  +KRGRPP    +  S K  D
Sbjct: 112 KPIDEGSEPIIK--RKRGRPPKIKSSSPSTKLDD 143



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = +1

Query: 52  DDGSTVVEKKGRGR-PKANGTQPESK---ELK-KRGR 147
           D+GS  + K+ RGR PK   + P +K    LK KRGR
Sbjct: 115 DEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGR 151


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 500 LVNSHVSSNLLNYRDSTTFSIEIISPKY 583
           L+++ ++SN  NY D+   S+ +  P Y
Sbjct: 462 LLDTSINSNWCNYEDTVQVSVRLNRPMY 489


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 506 NSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF 604
           N  +S + L YR+S  F I   +P  +  +G+F
Sbjct: 848 NDSISPSYLTYRESDGFGIASSNPSPAGSEGIF 880


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,330
Number of Sequences: 5004
Number of extensions: 50234
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)