Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0256
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959 29 3.0
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 29 3.0
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 29 3.9
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 29 3.9
01_06_1259 - 35810926-35811777 29 3.9
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841... 29 5.2
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 29 5.2
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 28 6.9
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 28 6.9
>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
Length = 849
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 466 KVYFHSTHTELSQRTITLRFLDPQVFIGLQILHLLHP 356
+VYF++ +L+ T+ L VFIGL +L L P
Sbjct: 14 RVYFYAFDIDLASSTLVTGMLSVHVFIGLLLLSLHAP 50
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 74 KRKDAVDQKPMEHNLSRKNLKNEVGLQLPPEQKI 175
+++ ++D+ HN SRK ++V LPPE+++
Sbjct: 679 EKEHSMDESNSTHNRSRKRTPDQVDGSLPPEKQV 712
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = +2
Query: 137 NEVGLQLPPEQKILLSLLMMNKHQ*LNEVEADQKVPRKKRESRARVKVEVVD 292
+EV ++ ++K + L+ + + + + ++KV ++K+E + + KVEVVD
Sbjct: 321 DEVKVEKKKKKKAKKASLVEGETEGAKDSKQEKKVKKEKKEKKKKKKVEVVD 372
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 221 PRLATGACSSSEDLAESFVLVAAGGRPRFL 132
P+ AC S ED SF +GGRP+F+
Sbjct: 66 PKSNQKACKSFEDFDISFKSTRSGGRPKFV 95
>01_06_1259 - 35810926-35811777
Length = 283
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 55 DGSTVVEKKGRGR------PKANGTQPESKELKKRGRPPAATRTKDSAKSSD 192
+ S+ K+GR R P+ + T P + + K+RGRPP +A+S++
Sbjct: 189 NASSQPRKRGRPRKDATMYPRKDATIPANTQPKRRGRPPKNRNLSGNAQSAE 240
>09_04_0600 +
18883094-18883393,18883606-18883755,18883851-18884142,
18884697-18884858,18884958-18885021,18887573-18888080
Length = 491
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 473 SLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSC 589
S M L+ V H S +L Y D+TT+ + + +P +C
Sbjct: 450 SRMRLALQLCVRRHTSWCMLLYSDTTTYGLNVTAPSGAC 488
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 52 DDGSTVVEKKGRGRP--KANGTQPESKELKKRGRPPAATRTKDSAKSSDD 195
D GS E G+ K GT+ +SKEL+K+ + TKD +K + D
Sbjct: 33 DQGSEKKEMSGKNIKSIKETGTKGQSKELQKK-ESKSRKSTKDKSKKNKD 81
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 74 KRKDAVDQKPME-HNLSRKNLKNEVGLQLPPEQKILLSLL 190
K+K AVD K + N +KNE+ ++ P QKI+L L
Sbjct: 224 KKKKAVDTKRSKSRNDVSAVMKNEIDIETPAGQKIVLEAL 263
>03_02_0514 +
9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 500 LVNSHVSSNLLNYRDSTTFSIEIISP 577
+V S SSNLLN +D +F +E + P
Sbjct: 492 IVGSVTSSNLLNPQDDLSFKLEYVHP 517
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,502
Number of Sequences: 37544
Number of extensions: 287705
Number of successful extensions: 954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -