Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0256
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_40080| Best HMM Match : DUF1267 (HMM E-Value=2.6)                   29   3.0  
SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            29   4.0  
SB_39593| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               28   9.3  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   9.3  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   9.3  

>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 300 AWPSTTSTFTLALDSRF-FLGTFWSASTSF---SYWCLFIIRRLSRIF 169
           AWP  T   T AL + + +LG  +  +T+F   S WCLFI+ +  R +
Sbjct: 707 AWPEPTPLITSALRADWTWLGRRYGLATTFLIISLWCLFILAKDRRTY 754


>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 999

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 76  KKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 201
           K+ + R KA   + E KEL+KR +   A +  +S KS  DE+
Sbjct: 812 KEKQERLKAKKKEEEEKELEKRSKTKDAKKYFESWKSKKDEE 853


>SB_40080| Best HMM Match : DUF1267 (HMM E-Value=2.6)
          Length = 109

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 5   VLAKYLHYKLFSELCLTTVQQLLKRKDAVDQKPMEHNLSRKNLKNEVGLQ 154
           VL  + HY +   L +   ++L +R   +D+   E+ L R+NL+  + L+
Sbjct: 14  VLCNHPHYLVNELLDIQLNEELSERNSVIDETLEENQLERENLEERMSLK 63


>SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 464 FCFSLMVSKLKYLVNSHVSSNLLNYRDSTTFSIEIISPKYSCKKGLF*EMI 616
           FC+  M S     +NS + +  LN++ ST    E++  K S   G F + I
Sbjct: 183 FCWQPMCS-----INSEIRTTFLNFKPSTIADFELLREKLSLLNGTFHQYI 228


>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 64  TVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAP 207
           TV ++KG    +  G  P+S E KK+         K      D++  P
Sbjct: 473 TVAKEKGASERRRRGRSPKSDEQKKKDEDSKPEEAKPEEPKEDEKSKP 520


>SB_39593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +1

Query: 49  SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 201
           +DD     E+ G   P  +  +P+ K LKK  +      ++D AK  + ++
Sbjct: 58  ADDSDEESEEDGEWDPSKDNPKPQKKALKKGTKRKRKAHSQDGAKEVNGKE 108


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 55  DGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 201
           +G    E+  + RP+ NG+Q E  +  ++        ++ S  SS DE+
Sbjct: 106 EGQEEKEQSDKKRPQTNGSQEEKGQPSEKNEEKPNIASEHSTPSSGDEK 154


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 55  DGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 201
           +G    E+  + RP+ NG+Q E  +  ++        ++ S  SS DE+
Sbjct: 384 EGQEEKEQSDKKRPQTNGSQEEKGQPSEKNEEKPNIASEHSTPSSGDEK 432


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 91  RPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQA 204
           RP +  T+P +   K    P  A RT+++A+  +++ A
Sbjct: 33  RPTSTSTKPTTASTKPTSPPSQAARTRNTAEKPEEKPA 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,758,135
Number of Sequences: 59808
Number of extensions: 339945
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)