Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0256
(749 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC115039-1|AAI15040.1| 798|Homo sapiens MKL1 protein protein. 32 1.9
AK128197-1|BAC87320.1| 161|Homo sapiens protein ( Homo sapiens ... 32 1.9
M23618-1|AAA88076.1| 95|Homo sapiens high mobility group prote... 32 2.5
U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator... 31 5.8
D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator... 31 5.8
BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix... 31 5.8
AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein. 31 5.8
AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein. 31 5.8
AC006127-2|AAC97987.1| 661|Homo sapiens SN24_HUMAN protein. 31 5.8
AC006127-1|AAC97986.1| 628|Homo sapiens BRG-1-HUMAN [AA 812-14... 31 5.8
>BC115039-1|AAI15040.1| 798|Homo sapiens MKL1 protein protein.
Length = 798
Score = 32.3 bits (70), Expect = 1.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 197 SSSEDLAESF-VLVAAGGRPRFLSSFDSGCVPLAFGLPRPFFSTTVEPSSDIV 42
SSS+ + + F +L+ +GG PR S F +P G P S V P S +
Sbjct: 743 SSSQQMDDLFDILIQSGGNPRNFSRFQGAAIPAREGEAIPEDSLWVPPGSTAI 795
>AK128197-1|BAC87320.1| 161|Homo sapiens protein ( Homo sapiens
cDNA FLJ46325 fis, clone TESTI4043371. ).
Length = 161
Score = 32.3 bits (70), Expect = 1.9
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 279 TFTLALDSRFFLGTFWSASTSFSYW-CLFIIRRLSRIFCSGGSWRPTSFFKFFRLRLCSI 103
+F L L FF F S SF ++ F+ L +F S SFF FFR+ LC
Sbjct: 73 SFFLFLSFSFFFFPFLSFFLSFFFFPSFFLFSFLLSLFPSFFLSLSLSFFLFFRVSLCHP 132
Query: 102 GFWSTA 85
G WS A
Sbjct: 133 G-WSGA 137
>M23618-1|AAA88076.1| 95|Homo sapiens high mobility group protein
protein.
Length = 95
Score = 31.9 bits (69), Expect = 2.5
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 73 EKKGRGRPKANGTQPESKELKKRGR-PPAATRTKDSAKSSDDEQAP 207
EK+GRGRP+ +P KR R P ++ K +AK+ P
Sbjct: 22 EKRGRGRPRKQPPEPSEVPTPKRPRGRPKGSKNKGAAKTRKTTTTP 67
>U29175-1|AAB40977.1| 1647|Homo sapiens transcriptional activator
protein.
Length = 1647
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 49 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 156
SD GS+ R R K + ESK+ KKRGRPPA
Sbjct: 1417 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1448
>D26156-1|BAA05143.1| 1647|Homo sapiens transcriptional activator
hSNF2b protein.
Length = 1647
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 49 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 156
SD GS+ R R K + ESK+ KKRGRPPA
Sbjct: 1417 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1448
>BC150298-1|AAI50299.1| 1647|Homo sapiens SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, sub
protein.
Length = 1647
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 49 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 156
SD GS+ R R K + ESK+ KKRGRPPA
Sbjct: 1417 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1448
>AF254822-2|AAG24789.1| 1647|Homo sapiens SMARCA4 isoform 1 protein.
Length = 1647
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 49 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 156
SD GS+ R R K + ESK+ KKRGRPPA
Sbjct: 1417 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1448
>AF254822-1|AAG24790.1| 1679|Homo sapiens SMARCA4 isoform 2 protein.
Length = 1679
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 49 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 156
SD GS+ R R K + ESK+ KKRGRPPA
Sbjct: 1449 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 1480
>AC006127-2|AAC97987.1| 661|Homo sapiens SN24_HUMAN protein.
Length = 661
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 49 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 156
SD GS+ R R K + ESK+ KKRGRPPA
Sbjct: 604 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 635
>AC006127-1|AAC97986.1| 628|Homo sapiens BRG-1-HUMAN [AA 812-1440]
protein.
Length = 628
Score = 30.7 bits (66), Expect = 5.8
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +1
Query: 49 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPA 156
SD GS+ R R K + ESK+ KKRGRPPA
Sbjct: 571 SDAGSSTPTTSTRSRDKDD----ESKKQKKRGRPPA 602
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,455,438
Number of Sequences: 237096
Number of extensions: 1699791
Number of successful extensions: 7520
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7520
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -