Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0256
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical pr...    35   0.054
AB070577-1|BAC66472.1|  396|Caenorhabditis elegans L-3,4-dihydro...    35   0.054
AL021172-1|CAA15962.1|  315|Caenorhabditis elegans Hypothetical ...    33   0.22 
AF056579-1|AAC78601.1|  315|Caenorhabditis elegans high mobility...    33   0.22 
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    31   1.2  
U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical p...    29   2.7  
U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical
           protein C06H5.7 protein.
          Length = 396

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -3

Query: 306 IFAWPSTTSTFTLALDSRFFLGTFWSASTSFSYWCLFIIRRLSRIFCSGGSWRPTSFFKF 127
           +  W        + ++S FF+G+FWSA  S+   C   + +L  +      W+P  + K+
Sbjct: 98  VLTWHDINRDMVVVIES-FFIGSFWSAMVSY---CSLSVLKLFAV------WKPFHYRKW 147

Query: 126 FRLRLC 109
           F +R C
Sbjct: 148 FTMRRC 153


>AB070577-1|BAC66472.1|  396|Caenorhabditis elegans
           L-3,4-dihydroxyphenylalanine receptorprotein.
          Length = 396

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = -3

Query: 306 IFAWPSTTSTFTLALDSRFFLGTFWSASTSFSYWCLFIIRRLSRIFCSGGSWRPTSFFKF 127
           +  W        + ++S FF+G+FWSA  S+   C   + +L  +      W+P  + K+
Sbjct: 98  VLTWHDINRDMVVVIES-FFIGSFWSAMVSY---CSLSVLKLFAV------WKPFHYRKW 147

Query: 126 FRLRLC 109
           F +R C
Sbjct: 148 FTMRRC 153


>AL021172-1|CAA15962.1|  315|Caenorhabditis elegans Hypothetical
           protein Y17G7A.1 protein.
          Length = 315

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +1

Query: 46  MSDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 210
           ++D GS+ V KKGRGRP  N +      L K+GR   A        + D   +PV
Sbjct: 111 VNDTGSSPV-KKGRGRPIKNPSADAGSPLVKKGRGRRAQTPAADTDAIDTASSPV 164



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 52  DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 210
           D  S+ V KKGRGRP  N +      L K+GR   A        + D   +PV
Sbjct: 158 DTASSPV-KKGRGRPAKNPSADAGSPLVKKGRGRQAKNLAADTDAIDTASSPV 209


>AF056579-1|AAC78601.1|  315|Caenorhabditis elegans high mobility
           group protein I beta protein.
          Length = 315

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +1

Query: 46  MSDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 210
           ++D GS+ V KKGRGRP  N +      L K+GR   A        + D   +PV
Sbjct: 111 VNDTGSSPV-KKGRGRPIKNPSADAGSPLVKKGRGRRAQTPAADTDAIDTASSPV 164



 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = +1

Query: 52  DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 210
           D  S+ V KKGRGRP  N +      L K+GR   A        + D   +PV
Sbjct: 158 DTASSPV-KKGRGRPAKNPSADAGSPLVKKGRGRQAKNLAADTDAIDTASSPV 209


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 76  KKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 201
           K+GRGRP++  T   +++ +      AA R+K +    ++EQ
Sbjct: 572 KRGRGRPRSRSTMSITEDSEPSTSSTAAKRSKRAESDEEEEQ 613


>U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical
           protein F32E10.6 protein.
          Length = 374

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +1

Query: 73  EKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVA 213
           +K  + +   +  + E +E+K++    ++  TK +A   D+E+ PVA
Sbjct: 190 KKSAKSKDDDSSDEEEEEEVKEKSPKKSSKSTKRAASDDDEEEEPVA 236


>Z81038-13|CAB02755.1|  971|Caenorhabditis elegans Hypothetical
           protein C25A1.10a protein.
          Length = 971

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 112 QPESKELKKRGRP-PAATRTKDSAKSSDDEQAPVA 213
           +P +K    +  P P A + + S+ SSDDE+ PVA
Sbjct: 321 KPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVA 355



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 112 QPESKELKKRGRP-PAATRTKDSAKSSDDEQAPVA 213
           +P +K    +  P P A + + S+ SSDDE+ PVA
Sbjct: 383 KPAAKPTPAKATPKPVAKKAESSSDSSDDEKKPVA 417



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 112 QPESKELKKRGRP-PAATRTKDSAKSSDDEQAPVA 213
           +P +K       P P A + + S+ SSDDE+ PVA
Sbjct: 505 KPAAKPTPANATPKPVAKKAESSSDSSDDEKKPVA 539



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 115 PESKELKKRGRPPAATRTKDSAKSSDDEQAPVA 213
           P  K   K    P A + + S+ SSDDE+ P A
Sbjct: 292 PAKKTPAKAAPKPVAKKAESSSDSSDDEKKPAA 324


>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +2

Query: 41  ELCLTTVQQLLKRKDAVDQKPMEHNLSRKNLKNEVGLQLPPEQK-ILLSLLMMNKHQ*LN 217
           E+  T  +   +  D V+   +E    +KN +  + L+    +K I L LL     +  +
Sbjct: 579 EIIQTPPEASSQDSDIVEAMEIEEITVKKN-QGFMSLEAAASEKPINLKLLFEETTKLDD 637

Query: 218 EVEADQKVPRKKRESRARVKVE 283
           +    ++V RKKRES+ R K+E
Sbjct: 638 KTTKRKRVNRKKRESKKRRKIE 659


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 49  SDDGSTVVEKKGRGRPKANGT-QPESKELKKRGRPPAATRTKDSAKSSDDE 198
           SD+      KK +G P   G  +P S       RP  A  TK SAK + DE
Sbjct: 321 SDEDDVDFGKKKKGAPSTRGRGRPPSSN-----RPTRAAATKRSAKDASDE 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,917
Number of Sequences: 27780
Number of extensions: 278261
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)