Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0256
(749 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 27 0.25
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 26 0.33
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 7.1
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 22 7.1
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 22 7.1
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 7.1
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 7.1
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 9.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 9.3
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 26.6 bits (56), Expect = 0.25
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 52 DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDE 198
+D T +E+ GRG+ + +G RGR + KD ++D E
Sbjct: 69 NDKKTDIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYE 117
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 26.2 bits (55), Expect = 0.33
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 221 PRLATGACSSSEDLAESFVLVAAGGRPRFLSSFD 120
P++ T S +A +F+L G PR +SSFD
Sbjct: 315 PQILTYKYSKRYKMAVAFMLSHPFGTPRIMSSFD 348
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 88 LSNNYNYNNNY 98
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 321 LSNNYNYNNNY 331
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.8 bits (44), Expect = 7.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 704 LSSTYNFKNNY 736
LS+ YN+ NNY
Sbjct: 321 LSNNYNYNNNY 331
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.4 bits (43), Expect = 9.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 153 WRPTSFFK 130
WRP SFFK
Sbjct: 119 WRPDSFFK 126
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 9.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 507 LTKYFNFETINEKQKFIFTVHILNYH 430
L YFN + T+ ILNYH
Sbjct: 294 LGTYFNCIMFMVASSVVSTILILNYH 319
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,322
Number of Sequences: 438
Number of extensions: 3877
Number of successful extensions: 24
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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