Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0255
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    29   0.58 
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    28   1.8  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    27   3.1  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   5.4  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   7.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   7.1  
SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    25   9.4  

>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 441 RLDGWTSSQPTWC*VATGAHRHLQTHYC 358
           R+D WT  Q  +  V +G H  + TH C
Sbjct: 246 RMDAWTLEQRVFYRVLSGMHSSISTHLC 273


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -3

Query: 241 LQYFMGMESVYLETYILTVLLLFGQSRGNINNFAWLCSS 125
           L   MG E VYLET     +   G   G +   A LCSS
Sbjct: 509 LYLMMGQELVYLETVPAGNVFAIGGLAGTVLRTATLCSS 547


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 261 KVKYEYYSNTSWVWNLSIW 205
           +V  E+Y +++W W +++W
Sbjct: 236 RVAQEFYMHSTWRWGIAVW 254


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 FGIIRSSNAFVDVYGLQ*PLNTRSAVSSS 428
           FG+I SS   VDVY +Q  +  +S   SS
Sbjct: 458 FGLIGSSKGVVDVYNMQSGIKRKSFGQSS 486


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 405 TRSAVSSSTHLSDKKKHVHT*NEIFE 482
           TR++  S   + +K+KHVH+ +E FE
Sbjct: 241 TRTSNYSRMSIREKRKHVHSYDEEFE 266


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 645 SSCGSGHPRVKIFRHWVPKTNI 710
           SS GSG+PR  +F  ++P+++I
Sbjct: 275 SSGGSGNPRKNLFSPYLPQSSI 296


>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 154 INNFAWLCSSLFLRKYEA 101
           +NN +W C+S+F+   EA
Sbjct: 452 LNNISWSCNSVFVESSEA 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,545,077
Number of Sequences: 5004
Number of extensions: 77321
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)