Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0255
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               28   7.6  

>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 776 SFSCSCRCQYQNQLFKTFSSNLDICFRNPMPENLDPRMTAPT*GCTL 636
           ++ CSC+  Y+    K    N+D C  NP       R T P   C +
Sbjct: 377 TYGCSCKAGYRG---KNCQENIDECDPNPCLNGATSRCTRPAIVCAI 420


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 686 PENLDPRMTAPT*GCTLKNYIYFLN*YERIVF*LLHYK 573
           P N+DP + +PT    L +++YF   Y+   +  LHYK
Sbjct: 186 PHNIDPTLPSPTLLNALLHFLYF---YQAPHYQALHYK 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,428,071
Number of Sequences: 59808
Number of extensions: 535825
Number of successful extensions: 1303
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)