Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0255
         (795 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X63556-1|CAA45118.1| 3002|Homo sapiens fibrillin protein.              31   4.8  
L13923-1|AAB02036.1| 2871|Homo sapiens fibrillin protein.              31   4.8  
AB177803-1|BAD16739.1| 2871|Homo sapiens fibrillin 1 protein.          31   4.8  
AB177802-1|BAD16738.1| 1365|Homo sapiens fibrillin 1 protein.          31   4.8  

>X63556-1|CAA45118.1| 3002|Homo sapiens fibrillin protein.
          Length = 3002

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 776 SFSCSCRCQYQNQLFKTFSSNLDICFRN 693
           S++C CR  YQ+ L +T   ++D C +N
Sbjct: 641 SYTCQCRAGYQSTLTRTECRDIDECLQN 668


>L13923-1|AAB02036.1| 2871|Homo sapiens fibrillin protein.
          Length = 2871

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 776 SFSCSCRCQYQNQLFKTFSSNLDICFRN 693
           S++C CR  YQ+ L +T   ++D C +N
Sbjct: 510 SYTCQCRAGYQSTLTRTECRDIDECLQN 537


>AB177803-1|BAD16739.1| 2871|Homo sapiens fibrillin 1 protein.
          Length = 2871

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 776 SFSCSCRCQYQNQLFKTFSSNLDICFRN 693
           S++C CR  YQ+ L +T   ++D C +N
Sbjct: 510 SYTCQCRAGYQSTLTRTECRDIDECLQN 537


>AB177802-1|BAD16738.1| 1365|Homo sapiens fibrillin 1 protein.
          Length = 1365

 Score = 31.1 bits (67), Expect = 4.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 776 SFSCSCRCQYQNQLFKTFSSNLDICFRN 693
           S++C CR  YQ+ L +T   ++D C +N
Sbjct: 510 SYTCQCRAGYQSTLTRTECRDIDECLQN 537


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,068,326
Number of Sequences: 237096
Number of extensions: 2646389
Number of successful extensions: 3715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3715
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)