Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0255
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83221-6|CAB05703.3|  210|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    30   2.2  
U53141-2|AAA96104.2|  491|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AC006809-1|AAK71409.1|  391|Caenorhabditis elegans Hypothetical ...    28   8.9  

>Z83221-6|CAB05703.3|  210|Caenorhabditis elegans Hypothetical
           protein C49A1.10 protein.
          Length = 210

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -3

Query: 208 LETYILTVLLLFGQSRG-----NINNFAWLCSSLFLRKYEA*VIMSCFARTIKFRLAFVL 44
           L   I+ +L+LFG  RG      ++N+     S FL      VI    A    F L +++
Sbjct: 93  LVAVIVAILMLFGAYRGIRNLLGVSNYYMSDDSTFLLGIMIIVIYLLVALLEIFFL-YIV 151

Query: 43  YKLYKTLCIY 14
           Y+LYK LC Y
Sbjct: 152 YRLYKHLCHY 161


>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 770 SCSCRCQYQNQLFKTFSSNLDICFRNPMPENLDPRMT 660
           +C    QY+++  +   SNL + F N  PE  DP  T
Sbjct: 42  TCKRYSQYRSRCIRVVKSNLLLIFDNMQPEKYDPVQT 78


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 770 SCSCRCQYQNQLFKTFSSNLDICFRNPMPENLDPRMT 660
           +C    QY+++  +   SNL + F N  PE  DP  T
Sbjct: 42  TCKRYSQYRSRCIRVVKSNLLLIFDNMQPEKYDPVQT 78


>U53141-2|AAA96104.2|  491|Caenorhabditis elegans Hypothetical
           protein C14C11.4 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 472 KYSRAVIIENK-TTYY*IKNKLTFSFILHPGNNLYL 576
           KY  AVII+      Y I   + F+FI   GN LY+
Sbjct: 253 KYQAAVIIDQYGRQMYAINQTIAFTFIAKDGNQLYI 288


>AC006809-1|AAK71409.1|  391|Caenorhabditis elegans Hypothetical
           protein Y5H2A.2 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 688 IGFRKQISKFEENVLNNWFWYWHLQEHEKL 777
           IGF++ +S +E N+L    W  H  E ++L
Sbjct: 167 IGFKESMSFWESNILMTANWLTHFDEFQEL 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,453,587
Number of Sequences: 27780
Number of extensions: 428337
Number of successful extensions: 897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)