Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0255
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 49  QMPIGTLWSLQNNSL*PR 102
           + PIG LW++ N  L P+
Sbjct: 803 EKPIGILWNMNNKRLDPK 820


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 221 GICLFGNIYFNCIIIVW 171
           G CL   ++F CI I W
Sbjct: 452 GFCLLFLMFFECIAISW 468


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 221 GICLFGNIYFNCIIIVW 171
           G CL   ++F CI I W
Sbjct: 505 GFCLLFLMFFECIAISW 521


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 648 SCGSGHPRVKIFRHWVPKTNIQI*RKCFEQLVL 746
           +C    P +++  HW+P     I     + LVL
Sbjct: 488 TCRQPEPLIELIEHWMPLLPNWILENILDMLVL 520


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 754 HLQEHEKLIESKP 792
           HL  HEKL+ES P
Sbjct: 139 HLPFHEKLVESFP 151


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 180 YCLDKVEGISTTLHGCVQAYFSENMRPR 97
           Y   ++  +  + H  ++A  SEN+RPR
Sbjct: 216 YVYGRISCVIASRHRNLEATESENVRPR 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,595
Number of Sequences: 438
Number of extensions: 5449
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)