Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0254
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0258 + 15489733-15490054,15490150-15490339,15490438-154909...    28   6.7  
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816...    28   6.7  
02_05_0584 - 30135768-30135790,30136104-30136866                       28   6.7  
04_03_0118 - 11474060-11475298                                         28   8.9  

>11_04_0258 +
           15489733-15490054,15490150-15490339,15490438-15490910,
           15501203-15501513
          Length = 431

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 3   SSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSL 128
           SSQ  P  PA HP+ Q T L +   +P   S  +  I  ++L
Sbjct: 248 SSQEMPTSPATHPSTQHTALTKRHSTPPASSDVDRPIGGSAL 289


>06_03_1303 +
           29180837-29181205,29181289-29181306,29181337-29181622,
           29185008-29186284,29186499-29187005
          Length = 818

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 48  QRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEATVCAE*YSI 179
           +R R+  PSPSPS    P+ + S T+      S  T  +  YSI
Sbjct: 522 ERKRVRAPSPSPSPSPSPSPSASATTPTQTGTSTTTTTSSMYSI 565


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +2

Query: 8   PKPTSPARGAPCRPTNEALATFPFPFCSLLP 100
           P P SPA GAP  P++ + + FPFP  S LP
Sbjct: 104 PAPGSPAAGAP--PSSGS-SGFPFPMPSPLP 131


>04_03_0118 - 11474060-11475298
          Length = 412

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 15  QPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLILL 137
           QPH P  H        W+ S +P V  YP   +   + + L
Sbjct: 109 QPHPPWGHSMKDEELFWRASMAPRVEEYPYQRVPKVAFLFL 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,328
Number of Sequences: 37544
Number of extensions: 375496
Number of successful extensions: 982
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)