Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0254
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_44775| Best HMM Match : DUF143 (HMM E-Value=7.3e-20)                28   6.9  

>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 9/23 (39%), Positives = 19/23 (82%)
 Frame = +1

Query: 316 ISPEHESENVNIKNFAHMKIHWS 384
           I+PE+E+++V I+  +H++ +WS
Sbjct: 150 INPEYENDSVKIRRKSHLEDYWS 172


>SB_44775| Best HMM Match : DUF143 (HMM E-Value=7.3e-20)
          Length = 342

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 12  SQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEATVCAE 167
           SQPH        +R  +W+PS S   LS+ N     T++    ++E T  +E
Sbjct: 16  SQPHGATCTCTQRRGSIWRPSLSQQPLSFSNHYTDSTTIHDTRLTEGTQKSE 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,436,591
Number of Sequences: 59808
Number of extensions: 433680
Number of successful extensions: 968
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)