Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0254
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC024793-4|AAF60694.2|  318|Caenorhabditis elegans Hypothetical ...    28   6.0  
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z81484-3|CAB03971.1|  346|Caenorhabditis elegans Hypothetical
           protein C47A10.6 protein.
          Length = 346

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +1

Query: 385 C*FMVRGSMLH*YDSNLEFYKCSG-----PIYILVCFPLKCYFSPSVRVV*RCFLEL 540
           C  ++  S+ H YD +   Y CS      P+++++   L   F  + R+V RC L L
Sbjct: 157 CSLILMASVFHEYDFDAPHYYCSSISVKFPLWVIIPEVLIIVFQIAARIVNRCLLAL 213


>U80448-7|AAB37820.1|  260|Caenorhabditis elegans Hypothetical
           protein F59A3.7 protein.
          Length = 260

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +2

Query: 374 FIGAVNSWSEAVCSISTIQTLNFTNVLVLSTFWYVFH*SAIFHLQYVLCKDVSSNLQM*P 553
           F+G+V ++   +  + +I     + +L+  +FWYV   + I H +    K V ++    P
Sbjct: 114 FVGSVETFHSIITILHSIFQFFISIILIRMSFWYVIVLTHICHFELQKSKVVDTSSVYLP 173

Query: 554 NLMTRTKP 577
             +   KP
Sbjct: 174 TYLPSYKP 181


>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 18  PHLPAVH---PADQRTRLWQPSPSPSVLSYP 101
           P+  A+H   P +Q   LW P PSP VL YP
Sbjct: 714 PYYTAIHELFPPEQS--LWVPVPSPVVLPYP 742


>AC024793-4|AAF60694.2|  318|Caenorhabditis elegans Hypothetical
           protein Y48G1BL.1 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = -1

Query: 635 GSRTGILKLFKTALTSATRAVWF----WSLN*ATFVSSRKHLYTTRTEGEK*HFSGK 477
           GSR    K F   LTS T   W     W++      S+RK   +TRT G   H S +
Sbjct: 19  GSRRRSRKTFTAKLTSPTFRRWSSTEKWTVASREIGSARKRFCSTRTPGAAIHSSNR 75


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 42  ADQRTRLWQPSPSPSVLSYP-NSTISYTSLILLDVSEATVCAE*YSIYCRLGPILHCR 212
           A Q   + Q  P P+ + YP N+T S  SL + D+      A  +  +   GP+L  R
Sbjct: 30  AGQPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIR 87


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 42  ADQRTRLWQPSPSPSVLSYP-NSTISYTSLILLDVSEATVCAE*YSIYCRLGPILHCR 212
           A Q   + Q  P P+ + YP N+T S  SL + D+      A  +  +   GP+L  R
Sbjct: 30  AGQPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIR 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,711,330
Number of Sequences: 27780
Number of extensions: 338273
Number of successful extensions: 846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)