Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0254
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    30   1.8  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    30   1.8  
At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reduct...    28   5.6  
At2g42470.1 68415.m05254 meprin and TRAF homology domain-contain...    27   9.8  

>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 6   SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 113
           + SQP++ + +P      +    PSPS LS+P+S++
Sbjct: 70  NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSL 105


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 6   SQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTI 113
           + SQP++ + +P      +    PSPS LS+P+S++
Sbjct: 70  NNSQPNISSPNPTSSNPPIGAQIPSPSPLSHPSSSL 105


>At4g32360.1 68417.m04607 NADP adrenodoxin-like ferredoxin reductase
           identical to NADP adrenodoxin-like ferredoxin reductase
           GI:28192433 from [Arabidopsis thaliana]
          Length = 483

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 304 LRSGISPEHESENVNIKNFAHMKIHWSC*FM 396
           +RSG++P+H    + I  F+ +  H  C F+
Sbjct: 62  VRSGVAPDHPETKIAINQFSRVAQHERCSFI 92


>At2g42470.1 68415.m05254 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 898

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 151 RQYAPNDTQYIVVSGPSYIAATYGWLRLTKYTKILLS 261
           R +   D   + +S P+  +  YGW R TKY+ I+L+
Sbjct: 62  RVWQIEDHLAVTLSVPNLESLRYGWERRTKYSFIVLN 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,039
Number of Sequences: 28952
Number of extensions: 306724
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)