Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0252
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55750 Cluster: PREDICTED: similar to CG11791-PA...   102   1e-20
UniRef50_UPI0000DB736A Cluster: PREDICTED: similar to CG11791-PA...    75   1e-12
UniRef50_Q5TTR8 Cluster: ENSANGP00000026493; n=3; Culicidae|Rep:...    60   5e-08
UniRef50_A5WVW8 Cluster: Novel protein similar to H.sapiens PCLO...    35   1.7  
UniRef50_A5DPR4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_UPI0000E812CA Cluster: PREDICTED: similar to ATP-bindin...    33   9.0  
UniRef50_Q929Q4 Cluster: Lin2220 protein; n=13; Listeria|Rep: Li...    33   9.0  

>UniRef50_UPI0000D55750 Cluster: PREDICTED: similar to CG11791-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG11791-PA, isoform A - Tribolium castaneum
          Length = 137

 Score =  102 bits (244), Expect = 1e-20
 Identities = 60/126 (47%), Positives = 69/126 (54%), Gaps = 14/126 (11%)
 Frame = +2

Query: 2   RIVHSKLRKREEHSASVHPAEVXXXXXXXXXXXXX-------------FRXXXXXXXXXX 142
           R+V SKLRKREEHS SVHPA+V                          +R          
Sbjct: 12  RLVRSKLRKREEHSNSVHPADVVLHQTTPAAATQTPTAPQALQPDPLAYRGQFLWQYPPP 71

Query: 143 XXXXXVYPHDQDNLMQPHGNERASF-RSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQL 319
                +Y +DQD L+Q    ER  F R  RKN+GGRW+RLVK+KP  EVYTIP ELKPQL
Sbjct: 72  PPQPYMYNNDQDTLVQNLPTERPGFVRGFRKNLGGRWRRLVKRKPPTEVYTIPAELKPQL 131

Query: 320 KQIYVY 337
           KQIYVY
Sbjct: 132 KQIYVY 137


>UniRef50_UPI0000DB736A Cluster: PREDICTED: similar to CG11791-PA,
           isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG11791-PA, isoform A - Apis mellifera
          Length = 160

 Score = 75.4 bits (177), Expect = 1e-12
 Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
 Frame = +2

Query: 167 HDQDNLMQPHGNERASF-RSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLKQIYVY 337
           +DQD L+    ++R  F +  RKNIGGRW+RLVK+KPE E   IPPELK QLK IYVY
Sbjct: 103 NDQDTLVHALPSDRPGFAKGFRKNIGGRWRRLVKRKPESETCAIPPELKDQLKTIYVY 160



 Score = 34.7 bits (76), Expect = 2.2
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 2  RIVHSKLRKREEHSASVHP 58
          R+V SKLRKRE+HS +VHP
Sbjct: 5  RLVRSKLRKREDHSNAVHP 23


>UniRef50_Q5TTR8 Cluster: ENSANGP00000026493; n=3; Culicidae|Rep:
           ENSANGP00000026493 - Anopheles gambiae str. PEST
          Length = 74

 Score = 60.1 bits (139), Expect = 5e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +2

Query: 200 NERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLKQIYVY 337
           NE+  F+ L++ + GR+KRLV +K  +    IPPELKPQLK IYVY
Sbjct: 29  NEKTGFKGLKRQLSGRFKRLVSRKAHEPAPVIPPELKPQLKTIYVY 74


>UniRef50_A5WVW8 Cluster: Novel protein similar to H.sapiens PCLO,
           piccolo; n=1; Danio rerio|Rep: Novel protein similar to
           H.sapiens PCLO, piccolo - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 230

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 272 PEQEVYTIPPELKPQLKQIYVY*TL*KRIVFSMLVLKQETSKALVLSVDVNQNSMVVTN- 448
           P  +    P   K  +KQ+    T+ + ++ ++   K ET    +  VD+N  S V  N 
Sbjct: 131 PTGDTSKAPIPDKTDVKQVQQATTVPEPVIGAVTAPKAETKTCPLCKVDLNIGSKVTPNY 190

Query: 449 SYQHECKEI*CNIC 490
           +   ECK+I CN+C
Sbjct: 191 NTCTECKKIVCNLC 204


>UniRef50_A5DPR4 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 951

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 176 DNLMQPHGNERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 307
           D +  PHG +R     LRK +G   K  +K K   ++Y IPP L
Sbjct: 702 DEMQTPHGLDRTFTEHLRKTLGKMEKLDLKGKATNDIY-IPPRL 744


>UniRef50_UPI0000E812CA Cluster: PREDICTED: similar to ATP-binding
           cassette sub-family A member 9; n=7; Gallus gallus|Rep:
           PREDICTED: similar to ATP-binding cassette sub-family A
           member 9 - Gallus gallus
          Length = 1461

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 520 ISFRPIISNDQFTKTFFIYYFYVISSLRNCIII 618
           I+ R +  N  F++ +F+Y+FY I+S+  C ++
Sbjct: 195 ITIRSVTHNCSFSEIYFLYFFYGIASIHFCFML 227


>UniRef50_Q929Q4 Cluster: Lin2220 protein; n=13; Listeria|Rep:
           Lin2220 protein - Listeria innocua
          Length = 646

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +1

Query: 487 LHGSAAILSLDISFRPIISNDQFTKTFFIYYFYVISSLRNCIIIK 621
           L G + +L+LD++   +IS   +T  + +YYF  ++S  N +  K
Sbjct: 601 LIGLSHMLALDLTLPVVISTGVYTLMYIVYYFVTLNSYTNIVFGK 645


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,736,892
Number of Sequences: 1657284
Number of extensions: 10178900
Number of successful extensions: 27850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27822
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)