Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0252
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   1.4  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   1.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.2  
AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine 3-mon...    22   5.6  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    22   5.6  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    22   5.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.4  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 251 SNDHRYSCEDC 219
           SN +RYSC DC
Sbjct: 282 SNVYRYSCRDC 292


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 251 SNDHRYSCEDC 219
           SN +RYSC DC
Sbjct: 40  SNVYRYSCRDC 50


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 485 ICTARQPFCP*TYLFDQLFLMT 550
           ICT  QP      +FD+L LM+
Sbjct: 273 ICTIHQPSSEVYSMFDKLLLMS 294


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 485 ICTARQPFCP*TYLFDQLFLMT 550
           ICT  QP      +FD+L LM+
Sbjct: 273 ICTIHQPSSEVYSMFDKLLLMS 294


>AY052624-1|AAL15472.1|  212|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 212

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 520 CLRTKWLPSRADVTLNFFTF 461
           C++ KW+P    VT + F +
Sbjct: 155 CMKEKWIPLCNSVTFSNFGY 174


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 520 CLRTKWLPSRADVTLNFFTF 461
           C++ KW+P    VT + F +
Sbjct: 388 CMKEKWIPLCNSVTFSNFGY 407


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 520 CLRTKWLPSRADVTLNFFTF 461
           C++ KW+P    VT + F +
Sbjct: 388 CMKEKWIPLCNSVTFSNFGY 407


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 263 SLVVSNDHRYSCEDCGNWHARC 198
           S V+S+ HR      G+W+  C
Sbjct: 446 SSVLSHGHRVIYSTVGHWYLDC 467


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,344
Number of Sequences: 336
Number of extensions: 2835
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)