Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0252
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    29   0.49 
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         28   1.1  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   6.0  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   8.0  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    25   8.0  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 290 CKLPVQASFSLVVSNDHRYSCEDCG 216
           C++ +   FS+ + N HRY C  CG
Sbjct: 259 CRMYINP-FSIFIDNGHRYRCNSCG 282


>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 505 ILSLDISFRPI--ISNDQFTKTFFIYYFYVISSLRNCII-IKY 624
           ++  D ++R    ++ND F KT ++ Y ++     NC++ +KY
Sbjct: 9   VIKEDFTYRECSDVANDVFKKTQWLLYVFLFIIFANCVVDVKY 51


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 297 GIV*TSCSGFFFTSRFQR 244
           G++ TS  GFFF  RF+R
Sbjct: 15  GLITTSIGGFFFLRRFRR 32


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +2

Query: 218 RSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLK 322
           R  RKN    W  L  K    E    PPEL P+LK
Sbjct: 150 RKKRKNSPDPWANLQTKPSFGETVQAPPEL-PELK 183


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 517 DISFRPIISNDQFTKTFF 570
           D+S  PI SND+  + FF
Sbjct: 372 DLSHHPIFSNDEVVRVFF 389


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 189 SRTATSVPVSAVFARISVVVGND**KRSLNRKF 287
           S++A   P+S   ARIS + GN   K +L +K+
Sbjct: 80  SKSAKRYPLSTKCARISYMQGNKDTKTALTKKY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,017
Number of Sequences: 5004
Number of extensions: 44292
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)