Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0252
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0088 + 1087807-1088282,1088752-1088974                           29   4.8  
05_06_0123 + 25817172-25817470,25818983-25819133,25819217-258193...    29   4.8  
02_02_0355 + 9312814-9313650                                           28   6.3  
02_01_0714 + 5339408-5340020,5340117-5340319,5340408-5340605,534...    28   6.3  
01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041...    28   6.3  

>10_01_0088 + 1087807-1088282,1088752-1088974
          Length = 232

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 123 KGCWRNARG--SGCGAGAAW 70
           +GCWR  RG   G G G AW
Sbjct: 113 RGCWRGRRGCRRGSGGGGAW 132


>05_06_0123 +
           25817172-25817470,25818983-25819133,25819217-25819399,
           25819740-25819814,25819985-25820140,25820275-25820373,
           25820457-25820587,25821077-25821158,25821251-25821598
          Length = 507

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +2

Query: 212 SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 307
           +FR LR  +GG+ KR+V+++ E+   +IPP L
Sbjct: 115 NFRVLRVQLGGKEKRVVQQQYEE--VSIPPHL 144


>02_02_0355 + 9312814-9313650
          Length = 278

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 114 WRNARGSGCGAGAAWSTSAGC 52
           WR  RG GC AG    T+  C
Sbjct: 217 WRRGRGGGCDAGGGDGTAGRC 237


>02_01_0714 +
           5339408-5340020,5340117-5340319,5340408-5340605,
           5340703-5340774,5341197-5341292,5341828-5341907,
           5341993-5342068,5342152-5342362,5342562-5342755,
           5342834-5342939,5343037-5343126,5343470-5344206
          Length = 891

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -2

Query: 114 WRNARGSGCGAGAAWSTSAGCTEAECS 34
           +RN RGSG GAGA  + S G   AE S
Sbjct: 116 YRNLRGSGSGAGAI-AASGGALLAEAS 141


>01_06_0665 -
           31003333-31003680,31003773-31003854,31004068-31004198,
           31004272-31004370,31004511-31004666,31004877-31004951,
           31005554-31005736,31005833-31005983,31006732-31007027
          Length = 506

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 212 SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 307
           +FR +R  +GGR KR+V ++ E+    IPP L
Sbjct: 114 NFRVIRVQLGGREKRVVSQQYEE--VAIPPHL 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,491,797
Number of Sequences: 37544
Number of extensions: 294940
Number of successful extensions: 966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)