Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0252
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)                   29   2.8  
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)             28   8.5  

>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -3

Query: 296 GSCKLPVQASFSLVVSNDHRYSCEDCGNW-HARC 198
           G  K P  A      SN     C++CG W HA+C
Sbjct: 205 GPVKYPCSACTKPTKSNQRAICCDECGQWTHAKC 238


>SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)
          Length = 396

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 296 GSCKLPVQASFSLVVSNDHRYSCEDCGNW-HARC 198
           G  K P  A      SN     C++CG+W HA+C
Sbjct: 97  GPVKHPCGACGKPTKSNQKAICCDECGHWMHAKC 130


>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -3

Query: 296 GSCKLPVQASFSLVVSNDHRYSCEDCGNW-HARC 198
           G  K P  A      SN     C++CG+W HA+C
Sbjct: 97  GPVKHPCGACGKPTKSNQKAICCDECGHWMHAKC 130


>SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 248 NDHRYSCEDCGNWHARC 198
           +D+RY CEDCG  ++ C
Sbjct: 704 SDYRYLCEDCGKPYSTC 720


>SB_47634| Best HMM Match : Metallophos (HMM E-Value=1e-11)
          Length = 585

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 564 FLHLLLLCDFKP*KLYYY 617
           F+H +LL D KP  LYYY
Sbjct: 243 FIHDVLLTDLKPSSLYYY 260


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,859,658
Number of Sequences: 59808
Number of extensions: 335141
Number of successful extensions: 1000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)