Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0252
         (706 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY059446-1|AAL13352.1|  181|Drosophila melanogaster GH19563p pro...    55   8e-08
AE014297-3699|AAN14035.1|  131|Drosophila melanogaster CG11791-P...    55   8e-08
AE014297-3698|AAF56386.1|  181|Drosophila melanogaster CG11791-P...    55   8e-08
BT011450-1|AAR99108.1|  228|Drosophila melanogaster RE41058p pro...    31   1.5  
BT024277-1|ABC86339.1| 1455|Drosophila melanogaster IP14411p pro...    29   8.1  
AY071090-1|AAL48712.2| 1454|Drosophila melanogaster RE15630p pro...    29   8.1  
AE014297-3788|AAF56460.1| 1266|Drosophila melanogaster CG11902-P...    29   8.1  

>AY059446-1|AAL13352.1|  181|Drosophila melanogaster GH19563p
           protein.
          Length = 181

 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +2

Query: 200 NERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLKQIYVY 337
           ++++SF+  RK   GR+KRLV +K E     IPPELKPQLK IYVY
Sbjct: 137 SDKSSFKGFRKQFSGRFKRLVTRKVEHTP-VIPPELKPQLKTIYVY 181


>AE014297-3699|AAN14035.1|  131|Drosophila melanogaster CG11791-PB,
           isoform B protein.
          Length = 131

 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +2

Query: 200 NERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLKQIYVY 337
           ++++SF+  RK   GR+KRLV +K E     IPPELKPQLK IYVY
Sbjct: 87  SDKSSFKGFRKQFSGRFKRLVTRKVEHTP-VIPPELKPQLKTIYVY 131


>AE014297-3698|AAF56386.1|  181|Drosophila melanogaster CG11791-PA,
           isoform A protein.
          Length = 181

 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 26/46 (56%), Positives = 33/46 (71%)
 Frame = +2

Query: 200 NERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLKQIYVY 337
           ++++SF+  RK   GR+KRLV +K E     IPPELKPQLK IYVY
Sbjct: 137 SDKSSFKGFRKQFSGRFKRLVTRKVEHTP-VIPPELKPQLKTIYVY 181


>BT011450-1|AAR99108.1|  228|Drosophila melanogaster RE41058p
           protein.
          Length = 228

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 200 NERASFRSLRKNIGGRWKRLVKKKPE 277
           ++++SF+  RK   GR+KRLV +K E
Sbjct: 183 SDKSSFKGFRKQFSGRFKRLVTRKVE 208


>BT024277-1|ABC86339.1| 1455|Drosophila melanogaster IP14411p
           protein.
          Length = 1455

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 416 DVNQNSMVVTNSYQHECKEI*CNICTAR 499
           DVNQ  ++   S  H CK I C IC +R
Sbjct: 770 DVNQEMILARLSRPHGCKLIQCMICLSR 797


>AY071090-1|AAL48712.2| 1454|Drosophila melanogaster RE15630p
           protein.
          Length = 1454

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 416 DVNQNSMVVTNSYQHECKEI*CNICTAR 499
           DVNQ  ++   S  H CK I C IC +R
Sbjct: 769 DVNQEMILARLSRPHGCKLIQCMICLSR 796


>AE014297-3788|AAF56460.1| 1266|Drosophila melanogaster CG11902-PA
           protein.
          Length = 1266

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 416 DVNQNSMVVTNSYQHECKEI*CNICTAR 499
           DVNQ  ++   S  H CK I C IC +R
Sbjct: 581 DVNQEMILARLSRPHGCKLIQCMICLSR 608


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,452,669
Number of Sequences: 53049
Number of extensions: 494265
Number of successful extensions: 1414
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)