Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0252
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr...    29   2.4  
L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z92830-11|CAB07351.1|  165|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical
           protein B0024.6 protein.
          Length = 1161

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 368 MLVLKQETSKALVLSVDVNQNSMVVTNSYQHE 463
           +L L    + +L+++VDV+Q   VVT  Y +E
Sbjct: 474 VLTLDSNNNSSLIMTVDVDQQEAVVTKHYTNE 505


>L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical
           protein F54H12.4 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +2

Query: 173 QDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKP--EQEVYTIPPELKPQLKQIY 331
           Q+NL Q + N++ + +  R+N+  +++ + +K+   +++ YT PP  K + +Q++
Sbjct: 68  QENLQQQNDNQKRNVKLERRNL--KYEVIPEKRESYQEKDYTNPPVYKAENEQLF 120


>Z92830-11|CAB07351.1|  165|Caenorhabditis elegans Hypothetical
           protein F11A5.13 protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 499 AAILSLDISFRPIISNDQFTKTFFIYYFYVISSL 600
           A++L + + F  I+  D+F KTF  Y+  +++ L
Sbjct: 20  ASLLLIILGFINILDKDEFDKTFVPYWMIILACL 53


>Z99281-53|CAB16519.2|  677|Caenorhabditis elegans Hypothetical
           protein Y57G11C.18 protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/55 (23%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
 Frame = +2

Query: 173 QDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKP--EQEVYTIPPELKPQLKQIY 331
           Q+NL Q + N++ + +  R+N+  +++ + +K+   +++ Y  PP  K + +Q++
Sbjct: 402 QENLQQQNDNQKRNVKLERRNL--KYEVIPEKRESYQEKYYESPPVYKAENEQLF 454


>Z66494-12|CAE17686.1| 1007|Caenorhabditis elegans Hypothetical
           protein D2085.5b protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 30  GRSTLLPYILLKYSKLRLRRNRILLHFASSPCGSFRRRCLR-LSSILTIRTT 182
           G  +LLP+ L     + +  +++ LH + S     RR CLR LSS++   TT
Sbjct: 129 GIESLLPHFLFALDIVMIESSKLRLHPSISEV-EVRRACLRALSSVICWPTT 179


>Z66494-11|CAA91265.2| 1048|Caenorhabditis elegans Hypothetical
           protein D2085.5a protein.
          Length = 1048

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 30  GRSTLLPYILLKYSKLRLRRNRILLHFASSPCGSFRRRCLR-LSSILTIRTT 182
           G  +LLP+ L     + +  +++ LH + S     RR CLR LSS++   TT
Sbjct: 170 GIESLLPHFLFALDIVMIESSKLRLHPSISEV-EVRRACLRALSSVICWPTT 220


>Z54284-8|CAE17775.1| 1007|Caenorhabditis elegans Hypothetical
           protein D2085.5b protein.
          Length = 1007

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 30  GRSTLLPYILLKYSKLRLRRNRILLHFASSPCGSFRRRCLR-LSSILTIRTT 182
           G  +LLP+ L     + +  +++ LH + S     RR CLR LSS++   TT
Sbjct: 129 GIESLLPHFLFALDIVMIESSKLRLHPSISEV-EVRRACLRALSSVICWPTT 179


>Z54284-7|CAA91065.2| 1048|Caenorhabditis elegans Hypothetical
           protein D2085.5a protein.
          Length = 1048

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 30  GRSTLLPYILLKYSKLRLRRNRILLHFASSPCGSFRRRCLR-LSSILTIRTT 182
           G  +LLP+ L     + +  +++ LH + S     RR CLR LSS++   TT
Sbjct: 170 GIESLLPHFLFALDIVMIESSKLRLHPSISEV-EVRRACLRALSSVICWPTT 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,495
Number of Sequences: 27780
Number of extensions: 252973
Number of successful extensions: 796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)