Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0252
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52620.1 68418.m06533 F-box family protein contains Pfam prof...    30   1.7  
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom...    28   5.2  

>At5g52620.1 68418.m06533 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 375

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +1

Query: 487 LHGSAAILSLDISFRPIISNDQFTKTFFIYYF 582
           +HG+ +++ +  +   I+S D  +++FF+YYF
Sbjct: 305 VHGNVSVVGVTATGEIILSMDYTSESFFVYYF 336


>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
            domain-containing protein contains Pfam profiles PF00168:
            C2 domain; contains PF02893: GRAM domain; similar to
            Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
            Length(GI:6980525); similar to Synaptotagmin III (SytIII)
            (Swiss-Prot:P40748) [Rattus norvegicus]
          Length = 1859

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 167  HDQDNLMQPHGNERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLK 322
            HD++  ++ H +   SF   +K I   WK      PEQ+V  +  E + +L+
Sbjct: 1623 HDEEGRLKFHFHSFVSFNVAQKTIMALWK-AKSLTPEQKVQAVEEESEQKLQ 1673


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,007
Number of Sequences: 28952
Number of extensions: 231983
Number of successful extensions: 603
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)