Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0250
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    29   4.0  
02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961...    28   9.2  

>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 625 FQKDLSGKALSIST*LSVSIQMTFRHLHKLNRLC 726
           FQ DL+ K   +ST L+ SI    +HL  +  LC
Sbjct: 558 FQADLASKLDILSTTLATSIDQQNKHLKSVENLC 591


>02_04_0347 +
           22193708-22193720,22194317-22194390,22195388-22196132,
           22196203-22196417,22196505-22196786,22196870-22196998,
           22197088-22197267,22197538-22197645,22197888-22198094
          Length = 650

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 594 SSIKSYTFNFNLTYSYELSNESPHQNPRLSW 502
           SS+K    +  L Y    S+  PH+NP   W
Sbjct: 511 SSVKQLNVSHGLLYGRINSDSGPHRNPESKW 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,451,545
Number of Sequences: 37544
Number of extensions: 311509
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)