Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0250
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)                 28   7.1  
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)               28   9.4  
SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)                     28   9.4  

>SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)
          Length = 670

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 270 VTV*GFKCRFYSNRHY---MCKCISKIRQRYIN*-SRLLSQVSGVNVSPKNTGDTRIVIN 437
           VTV G K  +  NR       K ++ +RQ+ I+  S      SG+ ++PK  GD RI ++
Sbjct: 281 VTVVGDKAPWLENRRLDKVKEKLLAMVRQKVISPVSEPTDWCSGMVIAPKRNGDVRICVD 340


>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
          Length = 602

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 271 LLSKALSVDFILIVIICVNVSPKYGSDTLINLGYCLRS 384
           LL+ +L  D + ++I C++ S    SDTL  L Y  R+
Sbjct: 127 LLADSLGGDGVTLMIACISPSSSVVSDTLNTLRYANRA 164


>SB_7996| Best HMM Match : efhand (HMM E-Value=1.4)
          Length = 570

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +1

Query: 304 LIVIICVNVSPKYG----SDTLINLGYCLRSLVSTFLQRTPAIRESL 432
           L V ICV +  KYG     D L N G+C     +T  ++  A+ + +
Sbjct: 390 LQVSICVTLDHKYGLRDLIDLLSNFGFCASYFEATLYKKNAAVTQGV 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,811,537
Number of Sequences: 59808
Number of extensions: 391794
Number of successful extensions: 1237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)