Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0250
(752 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U90278-1|AAB49993.1| 1484|Homo sapiens N-methyl-D-aspartate rece... 30 7.8
U88963-1|AAD00659.1| 1484|Homo sapiens N-methyl-D-aspartate rece... 30 7.8
BC113620-1|AAI13621.1| 1484|Homo sapiens glutamate receptor, ion... 30 7.8
BC113618-1|AAI13619.1| 1484|Homo sapiens glutamate receptor, ion... 30 7.8
AL589733-1|CAI12327.1| 384|Homo sapiens kinesin family member 2... 30 7.8
AB208850-1|BAD92087.1| 1136|Homo sapiens Glutamate [NMDA] recept... 30 7.8
AB012723-1|BAA36418.1| 384|Homo sapiens kinesin-like protein pr... 30 7.8
AB012722-1|BAA36417.1| 384|Homo sapiens kinesin-like protein pr... 30 7.8
>U90278-1|AAB49993.1| 1484|Homo sapiens N-methyl-D-aspartate receptor
2B subunit precursor protein.
Length = 1484
Score = 30.3 bits (65), Expect = 7.8
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 348 RYIN*SRLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 512
R + ++ ++ +SGVN SP++ D R YD + F HS KS+ C+ +
Sbjct: 900 RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959
Query: 513 VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 629
D+ + +L S +Y+ Y +P++I S S
Sbjct: 960 SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998
>U88963-1|AAD00659.1| 1484|Homo sapiens N-methyl-D-aspartate receptor
subunit 2B protein.
Length = 1484
Score = 30.3 bits (65), Expect = 7.8
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 348 RYIN*SRLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 512
R + ++ ++ +SGVN SP++ D R YD + F HS KS+ C+ +
Sbjct: 900 RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959
Query: 513 VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 629
D+ + +L S +Y+ Y +P++I S S
Sbjct: 960 SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998
>BC113620-1|AAI13621.1| 1484|Homo sapiens glutamate receptor,
ionotropic, N-methyl D-aspartate 2B protein.
Length = 1484
Score = 30.3 bits (65), Expect = 7.8
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 348 RYIN*SRLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 512
R + ++ ++ +SGVN SP++ D R YD + F HS KS+ C+ +
Sbjct: 900 RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959
Query: 513 VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 629
D+ + +L S +Y+ Y +P++I S S
Sbjct: 960 SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998
>BC113618-1|AAI13619.1| 1484|Homo sapiens glutamate receptor,
ionotropic, N-methyl D-aspartate 2B protein.
Length = 1484
Score = 30.3 bits (65), Expect = 7.8
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 348 RYIN*SRLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 512
R + ++ ++ +SGVN SP++ D R YD + F HS KS+ C+ +
Sbjct: 900 RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 959
Query: 513 VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 629
D+ + +L S +Y+ Y +P++I S S
Sbjct: 960 SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 998
>AL589733-1|CAI12327.1| 384|Homo sapiens kinesin family member 25
protein.
Length = 384
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 271 LLSKALSVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPA 417
LL L D L+VI+C++ S ++ + TL LG+ +R + +QR PA
Sbjct: 323 LLQDCLGGDAKLLVILCISPSQRHLAQTLQGLGFGIR---ARQVQRGPA 368
>AB208850-1|BAD92087.1| 1136|Homo sapiens Glutamate [NMDA] receptor
subunit epsilon 2 precursor variant protein.
Length = 1136
Score = 30.3 bits (65), Expect = 7.8
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Frame = +3
Query: 348 RYIN*SRLLSQVSGVNVSPKNTGD--TRIVINYD---YYN*FKHSTFKSFRYCGCDSMIN 512
R + ++ ++ +SGVN SP++ D R YD + F HS KS+ C+ +
Sbjct: 552 RLLRTAKNMANLSGVNGSPQSALDFIRRESSVYDISEHRRSFTHSDCKSYNNPPCEENLF 611
Query: 513 VDFDEATHSITRSCKLD*S*MYRT*YSIRQKPYTIRSIS 629
D+ + +L S +Y+ Y +P++I S S
Sbjct: 612 SDYISEVERTFGNLQLKDSNVYQDHYHHHHRPHSIGSAS 650
>AB012723-1|BAA36418.1| 384|Homo sapiens kinesin-like protein
protein.
Length = 384
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 271 LLSKALSVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPA 417
LL L D L+VI+C++ S ++ + TL LG+ +R + +QR PA
Sbjct: 323 LLQDCLGGDAKLLVILCISPSQRHLAQTLQGLGFGIR---ARQVQRGPA 368
>AB012722-1|BAA36417.1| 384|Homo sapiens kinesin-like protein
protein.
Length = 384
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 271 LLSKALSVDFILIVIICVNVSPKYGSDTLINLGYCLRSLVSTFLQRTPA 417
LL L D L+VI+C++ S ++ + TL LG+ +R + +QR PA
Sbjct: 323 LLQDCLGGDAKLLVILCISPSQRHLAQTLQGLGFGIR---ARQVQRGPA 368
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,633,460
Number of Sequences: 237096
Number of extensions: 1651402
Number of successful extensions: 7284
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7284
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -