Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0248
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...   137   9e-33
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855    134   5e-32
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    31   0.65 
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236...    28   8.0  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score =  137 bits (331), Expect = 9e-33
 Identities = 67/108 (62%), Positives = 79/108 (73%)
 Frame = +1

Query: 343 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 522
           +ALKA + V  G   K  +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 26  QALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKY 85

Query: 523 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 666
           PLT+E+AMKKIEDNNTLVFIV   A+K  IKAAVKK+YDI   KVNTL
Sbjct: 86  PLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTL 133


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score =  134 bits (325), Expect = 5e-32
 Identities = 65/108 (60%), Positives = 79/108 (73%)
 Frame = +1

Query: 343 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 522
           +ALK  + V  G   ++ +KIR SV F RPKT +  R PKYPR S P RN++D Y I+K+
Sbjct: 16  QALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKY 75

Query: 523 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 666
           PLT+E+AMKKIEDNNTLVFIV   A+K  IKAAVKK+YDI   KVNTL
Sbjct: 76  PLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTL 123


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
 Frame = +1

Query: 370 VKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 546
           +KGE  K++R+   NS   +R KT +PP H K  +K   K    D+Y+       S  + 
Sbjct: 140 LKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYSSDYSDTQSSDSG 197

Query: 547 KKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLHQ 672
            + E  ++      +S++  H +    K      AK  + H+
Sbjct: 198 SESESYSSSSLDTSSSSDHRHKRRKSSKKDKHRSAKGKSKHK 239


>04_03_0995 +
           21521877-21521977,21522152-21522217,21523630-21523696,
           21523959-21524041,21524318-21524359,21524614-21524733,
           21524806-21524869,21525028-21525113,21525217-21525299,
           21525994-21526070,21526549-21526567,21526568-21526661,
           21527042-21527087
          Length = 315

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -1

Query: 423 EMHRVANFPY-SLPM-FTFYNLPLSLKCFSNRFHYFFLSLNPSLFGLRCNLQFGNCWLGF 250
           E+  +   PY   PM F   +L  +  CF  ++++F +SLN  L     N  F   + GF
Sbjct: 181 EVSVIGYIPYFGKPMNFLLLSLMYAYYCFEYKWNFFAVSLNERLDFFESNWAF---FAGF 237

Query: 249 GS 244
           GS
Sbjct: 238 GS 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,923,014
Number of Sequences: 37544
Number of extensions: 238346
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)