Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0248
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)             139   2e-33
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)         68   8e-12
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       29   2.7  
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              29   2.7  
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)                       29   3.5  
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)                 29   4.7  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   8.1  
SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)           28   8.1  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score =  139 bits (336), Expect = 2e-33
 Identities = 69/108 (63%), Positives = 81/108 (75%)
 Frame = +1

Query: 343 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 522
           KA KA++ V KG    + +K+R SV F RPKT    R+PKYPR S P+ N++D Y IIK 
Sbjct: 138 KAQKAKKAVQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKH 197

Query: 523 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 666
           PLT+E+AMKKIEDNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL
Sbjct: 198 PLTTESAMKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTL 245


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 34/41 (82%), Positives = 35/41 (85%)
 Frame = +1

Query: 544 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 666
           MKKIEDNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL
Sbjct: 1   MKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTL 41


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +1

Query: 418 HFRRPKTFEPPRHPKYPRKSLPKRN-RMDAYNIIKF---PLTSEAAMKKI 555
           H   P+ F PP+H   PRK  P +N  +   N+      PL   +A KKI
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKNIALTTENLAPKKIPPLPGNSAPKKI 115


>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 225 CGNSSQNCQTQASSFQIEDCTEAQKDWD*GTKKSSETCY*ST*GSEEGCK 374
           CGN + NC  +A +   E  +    DW       +ETC      SEE C+
Sbjct: 129 CGNGTSNCNCEACTDFSEVISAELYDW----VPQNETCVVKNYSSEEACR 174


>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
          Length = 114

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 388 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAY 507
           K+ RK +     R+PK  + PR PK P+K   ++N+   +
Sbjct: 68  KKPRKPKKPKKPRKPKKPKKPRKPKKPKKGKWRKNKQGGH 107


>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
          Length = 599

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +1

Query: 364 KVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRK----SLPKRNRMDA 504
           K+VKGE  K+ ++     H +  K       PK PRK    S P+R   DA
Sbjct: 537 KLVKGEKSKKQKRGEREDHGKTSKDNRKSTSPKEPRKTQNESKPQRESPDA 587


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 500 SMRFLLGRDFLGYLGCLGGSNVLGLRKC 417
           SMR++ G  F+G L C  G + L LR C
Sbjct: 636 SMRYINGLHFIGLLLCAVGLSCLVLRTC 663


>SB_32271| Best HMM Match : Antimicrobial18 (HMM E-Value=1.6)
          Length = 154

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 453 PRRFKRLGSAEMHRVANFPYSLPMFTFYNLPLSL 352
           PRR +R+   ++ +  N P +  +F +YNL + L
Sbjct: 49  PRRCRRVSDEQVEKSPNEPKAQSLFLWYNLAIRL 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,968
Number of Sequences: 59808
Number of extensions: 283295
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)