Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0248
(687 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 131 5e-31
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 130 1e-30
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 31 1.0
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 31 1.0
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 31 1.0
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 29 3.1
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 4.1
L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclas... 29 4.1
AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical ... 29 4.1
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 29 4.1
AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical ... 29 4.1
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 28 5.4
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 28 7.2
AL117193-11|CAB55000.1| 174|Caenorhabditis elegans Hypothetical... 27 9.5
AF003151-9|AAK18911.1| 168|Caenorhabditis elegans Hypothetical ... 27 9.5
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 131 bits (316), Expect = 5e-31
Identities = 62/108 (57%), Positives = 81/108 (75%)
Frame = +1
Query: 343 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 522
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS PK ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 523 PLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 666
PLT+E+AMKKIE++NTLVFIV ANK+ IK AV KLY++ KVNTL
Sbjct: 71 PLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTL 118
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 130 bits (313), Expect = 1e-30
Identities = 61/110 (55%), Positives = 80/110 (72%)
Frame = +1
Query: 337 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 516
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 517 KFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 666
K P T+E++MKKIED+NTLVFIV ANKHHIK AV LY++ KVNTL
Sbjct: 68 KAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTL 117
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 543
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 544 MKKIEDNNTLVFIVH 588
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 543
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 544 MKKIEDNNTLVFIVH 588
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 543
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 544 MKKIEDNNTLVFIVH 588
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 367 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 543
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 544 MKKIEDNNTLVFIVH 588
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 415 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 546
+ FRR + RH R+++P ++ I KFP SE A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 396 YSLPMFTFYNLPLSLKCFSNRFHYFF 319
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>L80003-1|AAL77521.1| 1276|Caenorhabditis elegans guanylyl cyclase
protein.
Length = 1276
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 469 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 633
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758
>AF106591-5|AAK71394.1| 637|Caenorhabditis elegans Hypothetical
protein T01A4.1b protein.
Length = 637
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 469 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 633
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 79 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 131
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 469 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 633
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 647 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 699
>AF106591-3|AAO61423.1| 1276|Caenorhabditis elegans Hypothetical
protein T01A4.1c protein.
Length = 1276
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 31/55 (56%)
Frame = +1
Query: 469 RKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKL 633
+KSL +NR ++ ++ F S +++ I NNT ++ T+ K + A+KKL
Sbjct: 706 KKSLSLKNRKLSFGMVSFKSGSGGSVETIAQNNTQIY-TKTAIFK-GVVVAIKKL 758
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +1
Query: 421 FRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSAN 600
F P E RHP R+ P+R + +K LT A+ + V +AN
Sbjct: 190 FAHPPDLE--RHPLSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAPPTEPVAARTATAN 247
Query: 601 KHHIKAAVKKL 633
+ HIK ++L
Sbjct: 248 QRHIKLFEEEL 258
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 334 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 471
P K LK K+ K +H K ++K+ + + P PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156
>AL117193-11|CAB55000.1| 174|Caenorhabditis elegans Hypothetical
protein Y105C5A.22 protein.
Length = 174
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 379 EHGKRVRKI-RNSVHFRRPK-TFEPPRHPKYPRKSLPKRNRMD 501
E K++RKI RN H R+ T + P Y R+S P+RN D
Sbjct: 122 ERRKKMRKIGRNFSHDRQQSSTSLSAQPPVYRRRSEPRRNDCD 164
>AF003151-9|AAK18911.1| 168|Caenorhabditis elegans Hypothetical
protein D1007.4 protein.
Length = 168
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 419 ISADPRRLNLLGTLNTQGSLCLREIAWMPTTSLNSLSRLK 538
++ DP +LL + S ++ I W+P+ S+ S+ +LK
Sbjct: 34 MTRDPVSQSLLIAKIEENSTSIKSIEWIPSCSVKSIRKLK 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,178,587
Number of Sequences: 27780
Number of extensions: 220888
Number of successful extensions: 799
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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